Click here to switch to the map view.

The map label for this gene is rraA [C]

Identifier: 145295083

GI number: 145295083

Start: 1134193

End: 1134699

Strand: Direct

Name: rraA [C]

Synonym: cgR_1026

Alternate gene names: 145295083

Gene position: 1134193-1134699 (Clockwise)

Preceding gene: 145295080

Following gene: 145295084

Centisome position: 34.22

GC content: 51.08

Gene sequence:

>507_bases
GTGGGCATGACTCAAAGTGCTCCAGAATTCATTGCTACCGCAGACCTCGTAGACATTATCGGCGACAACGCGCAATCATG
CGACACTCAGTTTCAAAACCTTGGAGGTGCCACAGAATTCCACGGAACAATAACCACCGTGAAATGCTTCCAAGACAACG
CCCTCCTGAAATCCATCCTGAGTGAGGATAATCCTGGGGGAGTGCTGGTTATCGACGGCGACGCATCCGTGCACACCGCG
CTAGTTGGCGACATCATTGCAGGACTTGGAAAAGATCATGGTTGGTCCGGAGTAATTGTCAACGGAGCAATTCGAGACTC
CGCAGTCATTGGCACCATGACCTTTGGTTGTAAAGCCCTTGGAACCAACCCGCGGAAATCCACTAAAACTGGTTCCGGCG
AACGAGACGTAGTGGTATCGATTGGTGGCATTGACTTCATTCCTGGTCATTACGTCTACGCGGACTCTGACGGAATTATC
GTCACTGAGGCGCCAATTAAGCAGTAA

Upstream 100 bases:

>100_bases
GACTAATTTGTGGGCAATCTGGTTTTTTCGTAATTGTGTGGGATGAATCTCTTAAAAATTCACATTTAGCAGGACAAGCA
TACTGTTTTGGTTCTATGCT

Downstream 100 bases:

>100_bases
TTTGTTTTGACGACGCAGTAACGCAATCGGGGATTGTGGTCGATTCTTTAAGCAAGGGTAATGTCGAAATATCTAGGCAA
CCCGACTTTTATGTCCCTGC

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MGMTQSAPEFIATADLVDIIGDNAQSCDTQFQNLGGATEFHGTITTVKCFQDNALLKSILSEDNPGGVLVIDGDASVHTA
LVGDIIAGLGKDHGWSGVIVNGAIRDSAVIGTMTFGCKALGTNPRKSTKTGSGERDVVVSIGGIDFIPGHYVYADSDGII
VTEAPIKQ

Sequences:

>Translated_168_residues
MGMTQSAPEFIATADLVDIIGDNAQSCDTQFQNLGGATEFHGTITTVKCFQDNALLKSILSEDNPGGVLVIDGDASVHTA
LVGDIIAGLGKDHGWSGVIVNGAIRDSAVIGTMTFGCKALGTNPRKSTKTGSGERDVVVSIGGIDFIPGHYVYADSDGII
VTEAPIKQ
>Mature_167_residues
GMTQSAPEFIATADLVDIIGDNAQSCDTQFQNLGGATEFHGTITTVKCFQDNALLKSILSEDNPGGVLVIDGDASVHTAL
VGDIIAGLGKDHGWSGVIVNGAIRDSAVIGTMTFGCKALGTNPRKSTKTGSGERDVVVSIGGIDFIPGHYVYADSDGIIV
TEAPIKQ

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=154, Percent_Identity=38.961038961039, Blast_Score=116, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17353; Mature: 17221

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMTQSAPEFIATADLVDIIGDNAQSCDTQFQNLGGATEFHGTITTVKCFQDNALLKSIL
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCEEEEEEEECCCHHHHHHH
SEDNPGGVLVIDGDASVHTALVGDIIAGLGKDHGWSGVIVNGAIRDSAVIGTMTFGCKAL
CCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEHCCCEEEC
GTNPRKSTKTGSGERDVVVSIGGIDFIPGHYVYADSDGIIVTEAPIKQ
CCCCCCCCCCCCCCCEEEEEECCEECCCCEEEEECCCCEEEECCCCCC
>Mature Secondary Structure 
GMTQSAPEFIATADLVDIIGDNAQSCDTQFQNLGGATEFHGTITTVKCFQDNALLKSIL
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCEEEEEEEECCCHHHHHHH
SEDNPGGVLVIDGDASVHTALVGDIIAGLGKDHGWSGVIVNGAIRDSAVIGTMTFGCKAL
CCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEHCCCEEEC
GTNPRKSTKTGSGERDVVVSIGGIDFIPGHYVYADSDGIIVTEAPIKQ
CCCCCCCCCCCCCCCEEEEEECCEECCCCEEEEECCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]