Click here to switch to the map view.

The map label for this gene is nlpD [H]

Identifier: 145295029

GI number: 145295029

Start: 1081529

End: 1082242

Strand: Reverse

Name: nlpD [H]

Synonym: cgR_0973

Alternate gene names: 145295029

Gene position: 1082242-1081529 (Counterclockwise)

Preceding gene: 145295034

Following gene: 145295028

Centisome position: 32.65

GC content: 58.26

Gene sequence:

>714_bases
TTGCAGAAGCACACTCGAGGTGGCAAGCACCGCAAGCAGACTACCTCCCCAGTAACTAAGGGTGGTGTCGCTTTTGTTGC
AGTAGCTACCGGTGCCGTGTCAACTGCAGGCGCAGGCGGAGCAGTTGCTGCACAGGCTTCCAATCAGCCCGTTGAGGTCA
ACTTCGAACTTACTGCAAACGACACAACTGACCTCGTGGCTGGAAGCTCCGCGCCTCAGATCCTGTCCATCGCTGAGTTC
AAGCCAGTTGTGAACTTGGGCGATCAGATCGTCAAGACCATTCAGTACAACGCTGACCGCATCCAGGCTGACCTGGACGC
GCGTGGCCCTTCAGTGGTTCGCCCTGCTGAAGGTTCTTATACCTCCGGCTTTGGTGCTCGTTGGGGCACCAACCACAACG
GTGTGGATATCGCTAACGCAATCGGCACTCCAATCCTCGCTGCCATGGACGGCACTGTTATCGATGCAGGTCCTGCTTCC
GGTTTCGGCAACTGGGTTCGCCTCCAGCACGAAGATGGCACCATCACCGTGTACGGCCACATGGAGACTGTTGAGGTTAC
TGTTGGTCAGGTTGTCCGCGCTGGAGACCGCATCGCCGGCATGGGTAGCCGAGGATTCTCCACCGGTTCCCACCTCCACT
TCGAGGTTTACCCTGCGGGCGGCGGCGCTGTGGATCCAGCTCCTTGGCTTGCAGAGCGCGGCATTACTCTTTAA

Upstream 100 bases:

>100_bases
AGTGTTACTTCCGGTAGATAACAAGATGGTCTCAATTAAACTTCGATAGCGTGATATAAGCTTCGAAAAGTTTTGTGGCA
AGAATCGGAAGCAGGCGAAA

Downstream 100 bases:

>100_bases
TTAACTTTTGGGCGACCCTTTACGGTCGCCCTCTTGCGTTCCTAAAACATACCCAGTAAGTTACTGGGTATCCAATTCTT
GATTGAGGAACAATGTCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MQKHTRGGKHRKQTTSPVTKGGVAFVAVATGAVSTAGAGGAVAAQASNQPVEVNFELTANDTTDLVAGSSAPQILSIAEF
KPVVNLGDQIVKTIQYNADRIQADLDARGPSVVRPAEGSYTSGFGARWGTNHNGVDIANAIGTPILAAMDGTVIDAGPAS
GFGNWVRLQHEDGTITVYGHMETVEVTVGQVVRAGDRIAGMGSRGFSTGSHLHFEVYPAGGGAVDPAPWLAERGITL

Sequences:

>Translated_237_residues
MQKHTRGGKHRKQTTSPVTKGGVAFVAVATGAVSTAGAGGAVAAQASNQPVEVNFELTANDTTDLVAGSSAPQILSIAEF
KPVVNLGDQIVKTIQYNADRIQADLDARGPSVVRPAEGSYTSGFGARWGTNHNGVDIANAIGTPILAAMDGTVIDAGPAS
GFGNWVRLQHEDGTITVYGHMETVEVTVGQVVRAGDRIAGMGSRGFSTGSHLHFEVYPAGGGAVDPAPWLAERGITL
>Mature_237_residues
MQKHTRGGKHRKQTTSPVTKGGVAFVAVATGAVSTAGAGGAVAAQASNQPVEVNFELTANDTTDLVAGSSAPQILSIAEF
KPVVNLGDQIVKTIQYNADRIQADLDARGPSVVRPAEGSYTSGFGARWGTNHNGVDIANAIGTPILAAMDGTVIDAGPAS
GFGNWVRLQHEDGTITVYGHMETVEVTVGQVVRAGDRIAGMGSRGFSTGSHLHFEVYPAGGGAVDPAPWLAERGITL

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=41.6666666666667, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=43.1578947368421, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=40, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI87082297, Length=151, Percent_Identity=35.7615894039735, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 24359; Mature: 24359

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKHTRGGKHRKQTTSPVTKGGVAFVAVATGAVSTAGAGGAVAAQASNQPVEVNFELTAN
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEECC
DTTDLVAGSSAPQILSIAEFKPVVNLGDQIVKTIQYNADRIQADLDARGPSVVRPAEGSY
CCCCEEECCCCCCEEEHHHHCCHHHHHHHHHHHHHCCCHHEEEECCCCCCCEECCCCCCC
TSGFGARWGTNHNGVDIANAIGTPILAAMDGTVIDAGPASGFGNWVRLQHEDGTITVYGH
CCCCCCCCCCCCCCEEEHHHHCCCEEEECCCEEEECCCCCCCCCEEEEEECCCEEEEEEC
METVEVTVGQVVRAGDRIAGMGSRGFSTGSHLHFEVYPAGGGAVDPAPWLAERGITL
CEEEEEEHHHHHHCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MQKHTRGGKHRKQTTSPVTKGGVAFVAVATGAVSTAGAGGAVAAQASNQPVEVNFELTAN
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEECC
DTTDLVAGSSAPQILSIAEFKPVVNLGDQIVKTIQYNADRIQADLDARGPSVVRPAEGSY
CCCCEEECCCCCCEEEHHHHCCHHHHHHHHHHHHHCCCHHEEEECCCCCCCEECCCCCCC
TSGFGARWGTNHNGVDIANAIGTPILAAMDGTVIDAGPASGFGNWVRLQHEDGTITVYGH
CCCCCCCCCCCCCCEEEHHHHCCCEEEECCCEEEECCCCCCCCCEEEEEECCCEEEEEEC
METVEVTVGQVVRAGDRIAGMGSRGFSTGSHLHFEVYPAGGGAVDPAPWLAERGITL
CEEEEEEHHHHHHCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8132457; 9278503; 8208244 [H]