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The map label for this gene is ycjO [C]

Identifier: 145294897

GI number: 145294897

Start: 931828

End: 932862

Strand: Reverse

Name: ycjO [C]

Synonym: cgR_0844

Alternate gene names: 145294897

Gene position: 932862-931828 (Counterclockwise)

Preceding gene: 145294898

Following gene: 145294896

Centisome position: 28.15

GC content: 56.71

Gene sequence:

>1035_bases
ATGGCCACATTCAAACAGGCCAGAAGCGCTGCCTGGCTGATCGCCCCCGCCCTCGTGGTCCTTGCAGTGGTGATCGGATA
TCCCATCGTCCGAGCAATTTGGCTATCCTTCCAGGCCGACAAAGGCCTCGACCCCACCACCGGACTCTTCACCGACGGTG
GCTTCGCAGGACTAGACAACTACCTTTACTGGCTCACCCAACGATGCATGGGTTCAGACGGCACCATCCGAACCTGCCCA
CCCGGCACACTAGCCACCGACTTCTGGCCAGCACTACGCATCACGTTGTTCTTCACCGTGGTTACCGTCGGCTTGGAAAC
TATCCTCGGCACCGCCATGGCACTGATCATGAACAAAGAATTCCGTGGCCGCGCACTTGTTCGCGCAGCGATTCTTATCC
CTTGGGCAATCCCCACCGCAGTCACCGCAAAACTGTGGCAGTTCATCTTCGCGCCACAAGGCATCATCAACTCCATGTTT
GGGCTTAGTATCAGTTGGACAACCGATCCGTGGGCCGCCAGAGCCGCCGTTATTTTGGCCGACGTCTGGAAAACCACACC
ATTCATGGCACTGCTGATCCTCGCCGGTCTGCAAATGATCCCGAAGGAAACCTACGAAGCAGCCCGCGTCGATGGCGCAA
CCGCTTGGCAGCAATTCACCAAGATCACCCTCCCGCTGGTGCGCCCAGCTTTGATGGTGGCAGTACTCTTCCGCACCCTC
GATGCACTACGCATGTACGACCTCCCCGTCATCATGATCTCCAGCTCCTCCAACTCCCCCACCGCTGTTATCTCCCAGCT
GGTTGTGGAAGACATGCGCCAAAACAACTTCAACTCCGCATCGGCGCTCTCTACGCTGATCTTCCTGCTGATCTTCTTCG
TGGCGTTCATCATGATCCGATTCCTCGGCGCAGACGTTTCGGGCCAACGAGGGATGAAGAAAAAGAAACTGGGCAGAACC
AAGGATGAGAAACCCACCGCTAAGGATGCTGTTGTAAAGGCCGATTCTGCTGTGAAGGAACCTGCTAAGCCATGA

Upstream 100 bases:

>100_bases
ATCACGATGTGTGGCGGATTATGATCTATGTAACAAGAATGTGCAGTTTCACAGAACTGACAATCAACTTATTTTGACCT
GACAAAAGGAGCGACGACAC

Downstream 100 bases:

>100_bases
CTAAACGAACAAAAGGACTCATCCTCAACTACGCCGGAGTGGTTTTCATCCTGTTCTGGGGACTAGCTCCCTTCTACTGG
ATGGTGATCACCGCACTACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MATFKQARSAAWLIAPALVVLAVVIGYPIVRAIWLSFQADKGLDPTTGLFTDGGFAGLDNYLYWLTQRCMGSDGTIRTCP
PGTLATDFWPALRITLFFTVVTVGLETILGTAMALIMNKEFRGRALVRAAILIPWAIPTAVTAKLWQFIFAPQGIINSMF
GLSISWTTDPWAARAAVILADVWKTTPFMALLILAGLQMIPKETYEAARVDGATAWQQFTKITLPLVRPALMVAVLFRTL
DALRMYDLPVIMISSSSNSPTAVISQLVVEDMRQNNFNSASALSTLIFLLIFFVAFIMIRFLGADVSGQRGMKKKKLGRT
KDEKPTAKDAVVKADSAVKEPAKP

Sequences:

>Translated_344_residues
MATFKQARSAAWLIAPALVVLAVVIGYPIVRAIWLSFQADKGLDPTTGLFTDGGFAGLDNYLYWLTQRCMGSDGTIRTCP
PGTLATDFWPALRITLFFTVVTVGLETILGTAMALIMNKEFRGRALVRAAILIPWAIPTAVTAKLWQFIFAPQGIINSMF
GLSISWTTDPWAARAAVILADVWKTTPFMALLILAGLQMIPKETYEAARVDGATAWQQFTKITLPLVRPALMVAVLFRTL
DALRMYDLPVIMISSSSNSPTAVISQLVVEDMRQNNFNSASALSTLIFLLIFFVAFIMIRFLGADVSGQRGMKKKKLGRT
KDEKPTAKDAVVKADSAVKEPAKP
>Mature_343_residues
ATFKQARSAAWLIAPALVVLAVVIGYPIVRAIWLSFQADKGLDPTTGLFTDGGFAGLDNYLYWLTQRCMGSDGTIRTCPP
GTLATDFWPALRITLFFTVVTVGLETILGTAMALIMNKEFRGRALVRAAILIPWAIPTAVTAKLWQFIFAPQGIINSMFG
LSISWTTDPWAARAAVILADVWKTTPFMALLILAGLQMIPKETYEAARVDGATAWQQFTKITLPLVRPALMVAVLFRTLD
ALRMYDLPVIMISSSSNSPTAVISQLVVEDMRQNNFNSASALSTLIFLLIFFVAFIMIRFLGADVSGQRGMKKKKLGRTK
DEKPTAKDAVVKADSAVKEPAKP

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=276, Percent_Identity=27.536231884058, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790465, Length=229, Percent_Identity=30.1310043668122, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789861, Length=309, Percent_Identity=25.5663430420712, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788764, Length=201, Percent_Identity=28.3582089552239, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37657; Mature: 37526

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFKQARSAAWLIAPALVVLAVVIGYPIVRAIWLSFQADKGLDPTTGLFTDGGFAGLDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
YLYWLTQRCMGSDGTIRTCPPGTLATDFWPALRITLFFTVVTVGLETILGTAMALIMNKE
HHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FRGRALVRAAILIPWAIPTAVTAKLWQFIFAPQGIINSMFGLSISWTTDPWAARAAVILA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCHHHHHHHHHH
DVWKTTPFMALLILAGLQMIPKETYEAARVDGATAWQQFTKITLPLVRPALMVAVLFRTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALRMYDLPVIMISSSSNSPTAVISQLVVEDMRQNNFNSASALSTLIFLLIFFVAFIMIR
HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FLGADVSGQRGMKKKKLGRTKDEKPTAKDAVVKADSAVKEPAKP
HHCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHCHHHHCCCCCC
>Mature Secondary Structure 
ATFKQARSAAWLIAPALVVLAVVIGYPIVRAIWLSFQADKGLDPTTGLFTDGGFAGLDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
YLYWLTQRCMGSDGTIRTCPPGTLATDFWPALRITLFFTVVTVGLETILGTAMALIMNKE
HHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FRGRALVRAAILIPWAIPTAVTAKLWQFIFAPQGIINSMFGLSISWTTDPWAARAAVILA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCHHHHHHHHHH
DVWKTTPFMALLILAGLQMIPKETYEAARVDGATAWQQFTKITLPLVRPALMVAVLFRTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALRMYDLPVIMISSSSNSPTAVISQLVVEDMRQNNFNSASALSTLIFLLIFFVAFIMIR
HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FLGADVSGQRGMKKKKLGRTKDEKPTAKDAVVKADSAVKEPAKP
HHCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]