| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
Click here to switch to the map view.
The map label for this gene is icd [H]
Identifier: 145294837
GI number: 145294837
Start: 866399
End: 868615
Strand: Reverse
Name: icd [H]
Synonym: cgR_0784
Alternate gene names: 145294837
Gene position: 868615-866399 (Counterclockwise)
Preceding gene: 145294838
Following gene: 145294836
Centisome position: 26.21
GC content: 57.6
Gene sequence:
>2217_bases ATGGCCAAGATCATTTGGACCCGCACCGACGAAGCACCGTTGCTCGCGACCTACTCGCTGAAGCCGGTCGTCGAAGCATT TGCCGCTACCGCGGGCATTGAGGTCGAAACCCGAGACATTTCACTGGCTGGCCGTATCCTCGCCCAGTTCCCAGAGCGTC TCACCGAAGAGCAGAAGATTGGCGACGCCCTCGCAGAACTCGGCGAGCTGGCTAAGACCCCCGAAGCTAACATCATTAAG CTGCCGAACATCTCCGCTTCTGTTCCACAGCTCAAGGCTGCTATTAAGGAACTGCAGGACCAGGGTTACGACATCCCAGA TCTGCCAGACACCGCCACCACCGACGAGGAAAAGGACATCCTCGCTCGTTACAACGCTGTCAAGGGTTCCGCTGTGAACC CAGTGCTGCGTGAAGGCAACTCCGACCGCCGTGCACCAATCGCTGTGAAGAACTTTGTTAAGAAGTTCCCTCACCGCATG GGCGAGTGGTCTGCAGATTCTAAGACCAACGTTGCCACCATGGATGCAAACGACTTCCGCCACAATGAGAAGTCCGTCAT CCTGGAAGACGCTGATACCGTCACCATTAAGCACGTTGCAGCAGACGGCACCGAGACTATCCTTAAGGACGGCCTCAAGC TGCAAAAGGGCGAAGTTCTTGACGGCACCGTCATGTCTGCAAAGGCACTGGACGCATTCCTCAAGGAGCAGATTGCTCGC GCCAAGGCTGAGGGCATCCTATTCTCCACTCACCTGAAGGCCACCATGATGAAGGTCTCCGACCCCATCATCTTCGGCCA CGTCGTCCGTGCATTCTTCGCAGATGTCTTCGAGCAGTACGGCGAGCAGCTTCTGGCAGCTGGCCTTAACGGCGAGAACG GCCTTGCTGCAATCTTCTCCGGCCTGGAGTCCCTGGACAACGGCGAAGAGATCAAGGCTGCTTTCAACAAGGCACTTGCT GAAGGCCCAGATCTGGCTATGGTGAACTCAGCAAAGGGCATCACCAACCTGCACGTTCCTTCCGACGTCATCGTTGACGC TTCCATGCCAGCTATGATCCGCACCTCCGGCCACATGTGGAACAAGGACGATCAGGAGCAGGACACCCTCGCTGTAATCC CAGACTCCTCCTACGCTGGCGTGTACCAGACCGTCATTGAGGATTGCCGCAAGAACGGCGCATTCGATCCAACCACCATG GGTACCGTCCCAAACGTTGGTCTGATGGCTCAGAAGGCTGAAGAGTACGGCTCCCACGACAAGACCTTCCGCATCGAAGC TGACGGCAAGGTTCAGGTTGTTGCATCCAACGGCGACGTCCTTATCGAGCACGACGTTGAGACCGGTGACATCTGGCGTG CATGCCAGGTTAAGGACGCCCCAATCCAGGACTGGGTCAAGCTTGCTGTCACCCGCTCCCGCCTGTCCGGTATGCCAGCA GTGTTCTGGTTGGATCCAGAGCGTGCTCACGACCGCAACCTGATCACCCTGGTTGAGAAGTACCTGCAGGACCACGACAC CGACGGCCTGGACATCCAGATCCTCTCCCCTGTCGAGGCAACTCAGCTCTCCATCGACCGCATCCGTCGTGGCGAGGACA CCATCTCCGTTACCGGTAACGTCCTTCGTGACTACAACACCGACCTCTTCCCCATCCTGGAGCTGGGCACCTCTGCAAAG ATGCTGTCCGTTGTTCCTTTGATGGCTGGCGGCGGACTTTTCGAGACCGGTGCAGGTGGATCCGCACCTAAGCACGTTCA GCAGCTGCAGGAAGAAAACCACCTGCGCTGGGACTCCCTCGGTGAGTTCCTCGCACTGGCTGAGTCCTTCCGCCACGAGC TGAACAACAACGGCAACGCTAAGGCTGGTGTCCTGGCAGACGCTCTGGACAAAGCAACTGAGAAGCTCCTCAACGAAGAG AAGTCCCCATCCCGCAAGGTTGGCGAGATCGACAACCGTGGATCCCACTTCTGGCTGACCAAGTTCTGGGCTGACGAGCT CGCTGCTCAGACCGAAGACGCAGACCTAGCTGCTACCTTCGCACCAGTTGCAGAAGCACTCGGCGAGAACGCTGCTGACA TCGACGCTGCCCTCATTGCAGCTCAGGGTGGCGCAGTTGATCTTGGTGGCTACTACGCTCCAAACGATGAGAAGACCTCT GCAGTTATGCGCCCAGTCGCACAGTTCAACGAGATCGTTGACGCACTGAAGAAGTAA
Upstream 100 bases:
>100_bases TCTATGAAGGGATAAAAACCCCACCCCACACACGTCAGCAATGCGTGGAACCCTGTATTCTAGGTAGCTGAACAAAAGAG CCCATCAACCAAGGAGACTC
Downstream 100 bases:
>100_bases AGTCTCTTTACAAAAAGCGCTGTGCTTCCTCACACGGAAGCTCAGCGCTTTTTCATATTTTTATTGACATAATGGGCACA TGCGTTTTTCTCGAGTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 738; Mature: 737
Protein sequence:
>738_residues MAKIIWTRTDEAPLLATYSLKPVVEAFAATAGIEVETRDISLAGRILAQFPERLTEEQKIGDALAELGELAKTPEANIIK LPNISASVPQLKAAIKELQDQGYDIPDLPDTATTDEEKDILARYNAVKGSAVNPVLREGNSDRRAPIAVKNFVKKFPHRM GEWSADSKTNVATMDANDFRHNEKSVILEDADTVTIKHVAADGTETILKDGLKLQKGEVLDGTVMSAKALDAFLKEQIAR AKAEGILFSTHLKATMMKVSDPIIFGHVVRAFFADVFEQYGEQLLAAGLNGENGLAAIFSGLESLDNGEEIKAAFNKALA EGPDLAMVNSAKGITNLHVPSDVIVDASMPAMIRTSGHMWNKDDQEQDTLAVIPDSSYAGVYQTVIEDCRKNGAFDPTTM GTVPNVGLMAQKAEEYGSHDKTFRIEADGKVQVVASNGDVLIEHDVETGDIWRACQVKDAPIQDWVKLAVTRSRLSGMPA VFWLDPERAHDRNLITLVEKYLQDHDTDGLDIQILSPVEATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAK MLSVVPLMAGGGLFETGAGGSAPKHVQQLQEENHLRWDSLGEFLALAESFRHELNNNGNAKAGVLADALDKATEKLLNEE KSPSRKVGEIDNRGSHFWLTKFWADELAAQTEDADLAATFAPVAEALGENAADIDAALIAAQGGAVDLGGYYAPNDEKTS AVMRPVAQFNEIVDALKK
Sequences:
>Translated_738_residues MAKIIWTRTDEAPLLATYSLKPVVEAFAATAGIEVETRDISLAGRILAQFPERLTEEQKIGDALAELGELAKTPEANIIK LPNISASVPQLKAAIKELQDQGYDIPDLPDTATTDEEKDILARYNAVKGSAVNPVLREGNSDRRAPIAVKNFVKKFPHRM GEWSADSKTNVATMDANDFRHNEKSVILEDADTVTIKHVAADGTETILKDGLKLQKGEVLDGTVMSAKALDAFLKEQIAR AKAEGILFSTHLKATMMKVSDPIIFGHVVRAFFADVFEQYGEQLLAAGLNGENGLAAIFSGLESLDNGEEIKAAFNKALA EGPDLAMVNSAKGITNLHVPSDVIVDASMPAMIRTSGHMWNKDDQEQDTLAVIPDSSYAGVYQTVIEDCRKNGAFDPTTM GTVPNVGLMAQKAEEYGSHDKTFRIEADGKVQVVASNGDVLIEHDVETGDIWRACQVKDAPIQDWVKLAVTRSRLSGMPA VFWLDPERAHDRNLITLVEKYLQDHDTDGLDIQILSPVEATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAK MLSVVPLMAGGGLFETGAGGSAPKHVQQLQEENHLRWDSLGEFLALAESFRHELNNNGNAKAGVLADALDKATEKLLNEE KSPSRKVGEIDNRGSHFWLTKFWADELAAQTEDADLAATFAPVAEALGENAADIDAALIAAQGGAVDLGGYYAPNDEKTS AVMRPVAQFNEIVDALKK >Mature_737_residues AKIIWTRTDEAPLLATYSLKPVVEAFAATAGIEVETRDISLAGRILAQFPERLTEEQKIGDALAELGELAKTPEANIIKL PNISASVPQLKAAIKELQDQGYDIPDLPDTATTDEEKDILARYNAVKGSAVNPVLREGNSDRRAPIAVKNFVKKFPHRMG EWSADSKTNVATMDANDFRHNEKSVILEDADTVTIKHVAADGTETILKDGLKLQKGEVLDGTVMSAKALDAFLKEQIARA KAEGILFSTHLKATMMKVSDPIIFGHVVRAFFADVFEQYGEQLLAAGLNGENGLAAIFSGLESLDNGEEIKAAFNKALAE GPDLAMVNSAKGITNLHVPSDVIVDASMPAMIRTSGHMWNKDDQEQDTLAVIPDSSYAGVYQTVIEDCRKNGAFDPTTMG TVPNVGLMAQKAEEYGSHDKTFRIEADGKVQVVASNGDVLIEHDVETGDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAV FWLDPERAHDRNLITLVEKYLQDHDTDGLDIQILSPVEATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKM LSVVPLMAGGGLFETGAGGSAPKHVQQLQEENHLRWDSLGEFLALAESFRHELNNNGNAKAGVLADALDKATEKLLNEEK SPSRKVGEIDNRGSHFWLTKFWADELAAQTEDADLAATFAPVAEALGENAADIDAALIAAQGGAVDLGGYYAPNDEKTSA VMRPVAQFNEIVDALKK
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80063; Mature: 79932
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIIWTRTDEAPLLATYSLKPVVEAFAATAGIEVETRDISLAGRILAQFPERLTEEQKI CCEEEEECCCCCCEEEEECHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHH GDALAELGELAKTPEANIIKLPNISASVPQLKAAIKELQDQGYDIPDLPDTATTDEEKDI HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH LARYNAVKGSAVNPVLREGNSDRRAPIAVKNFVKKFPHRMGEWSADSKTNVATMDANDFR HHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHCC HNEKSVILEDADTVTIKHVAADGTETILKDGLKLQKGEVLDGTVMSAKALDAFLKEQIAR CCCCEEEEECCCEEEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AKAEGILFSTHLKATMMKVSDPIIFGHVVRAFFADVFEQYGEQLLAAGLNGENGLAAIFS HHHCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH GLESLDNGEEIKAAFNKALAEGPDLAMVNSAKGITNLHVPSDVIVDASMPAMIRTSGHMW HHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCEEECCCCCHHHCCCCCCC NKDDQEQDTLAVIPDSSYAGVYQTVIEDCRKNGAFDPTTMGTVPNVGLMAQKAEEYGSHD CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC KTFRIEADGKVQVVASNGDVLIEHDVETGDIWRACQVKDAPIQDWVKLAVTRSRLSGMPA CEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE VFWLDPERAHDRNLITLVEKYLQDHDTDGLDIQILSPVEATQLSIDRIRRGEDTISVTGN EEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECHH VLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQLQEENHLRWDSL HHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHH GEFLALAESFRHELNNNGNAKAGVLADALDKATEKLLNEEKSPSRKVGEIDNRGSHFWLT HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEH KFWADELAAQTEDADLAATFAPVAEALGENAADIDAALIAAQGGAVDLGGYYAPNDEKTS HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEECCCEEECCCEECCCCCHHH AVMRPVAQFNEIVDALKK HHHHHHHHHHHHHHHHCC >Mature Secondary Structure AKIIWTRTDEAPLLATYSLKPVVEAFAATAGIEVETRDISLAGRILAQFPERLTEEQKI CEEEEECCCCCCEEEEECHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHH GDALAELGELAKTPEANIIKLPNISASVPQLKAAIKELQDQGYDIPDLPDTATTDEEKDI HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH LARYNAVKGSAVNPVLREGNSDRRAPIAVKNFVKKFPHRMGEWSADSKTNVATMDANDFR HHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHCC HNEKSVILEDADTVTIKHVAADGTETILKDGLKLQKGEVLDGTVMSAKALDAFLKEQIAR CCCCEEEEECCCEEEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AKAEGILFSTHLKATMMKVSDPIIFGHVVRAFFADVFEQYGEQLLAAGLNGENGLAAIFS HHHCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH GLESLDNGEEIKAAFNKALAEGPDLAMVNSAKGITNLHVPSDVIVDASMPAMIRTSGHMW HHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCEEECCCCCHHHCCCCCCC NKDDQEQDTLAVIPDSSYAGVYQTVIEDCRKNGAFDPTTMGTVPNVGLMAQKAEEYGSHD CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC KTFRIEADGKVQVVASNGDVLIEHDVETGDIWRACQVKDAPIQDWVKLAVTRSRLSGMPA CEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE VFWLDPERAHDRNLITLVEKYLQDHDTDGLDIQILSPVEATQLSIDRIRRGEDTISVTGN EEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECHH VLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQLQEENHLRWDSL HHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHH GEFLALAESFRHELNNNGNAKAGVLADALDKATEKLLNEEKSPSRKVGEIDNRGSHFWLT HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEH KFWADELAAQTEDADLAATFAPVAEALGENAADIDAALIAAQGGAVDLGGYYAPNDEKTS HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEECCCEEECCCEECCCCCHHH AVMRPVAQFNEIVDALKK HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7836312; 12948626 [H]