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The map label for this gene is ydhC [H]

Identifier: 145294835

GI number: 145294835

Start: 864786

End: 865508

Strand: Reverse

Name: ydhC [H]

Synonym: cgR_0782

Alternate gene names: 145294835

Gene position: 865508-864786 (Counterclockwise)

Preceding gene: 145294836

Following gene: 145294834

Centisome position: 26.12

GC content: 50.35

Gene sequence:

>723_bases
ATGGTTCAAAAAGATGCCCAGGCCTCCCCTGCTACGAGAAAAGCAGATCAGGTATACACACAGATTCGTAGTGAAATCGA
AGATGGAACCTTAAATCCTGGGCAACGAATGTCGGAAGTGTGGCTGGTTGAACACACCGGCGCTTCGAGAACCCCAGTCC
GGGATGCTCTCCGCCGGTTAGCCGCAGACGAGTTGATCATTTTGGAGCCACGTCAGGCACCCATGGTGTCGCCATTATCG
CTTCGCCACATTAAGGATCTGTTTGAGTTCCGCAGGATCGTCGAGGTCGCAGCGCTTGAGGAAATCTCTGTTGGAGCGAG
TAAATCACCGCGTATCTTTGGTGAGTTTTCTACGTTGGCGGCAGATTTTCGAGAGCTGGAAAACTCTGCAGACGATGCAG
ATTTCACCGCCGATTTTAGGCGATTGACCAGTAAGTTTGATGATCTTGTTGCAGCAAATACTCACAACCAATTCCTTGGA
CGCAGCATCTTAAGTTTGAAACCGCACACCACGAGGCTGCGGATCATTGCGCATTCCGATCATGCGCGTCTGCGCCAATC
GGTTCAGGAACATATTGAAATGTGTGAAGCTGTAGCCTCAGGAGATTTAAGGTCGGCAGGCGCTGCATGTAGACAGCACC
TGATCCATGTAGAAAAGAGCATTTTGACCGCGTTGATTTATGCTGATTCTACGGGCTCGCAGGGCATTGACATTAGGTCT
TAG

Upstream 100 bases:

>100_bases
AAGCAAAAAATTGCTTGTCGACGTCTCCCCCAACCTAGCATCCACTTTCTGCAACCCAGTGTCACAAATAGTCTAAATTT
CGGTGTACTAAGGTGTTGTC

Downstream 100 bases:

>100_bases
AACCAGCGTGCACTGATGGCGATTAAAGGGGGTTGCGCCTATACCTATTACTAGTATACATTTCGGTATACCTAAATCGA
AATGAGGGATTTATGCCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MVQKDAQASPATRKADQVYTQIRSEIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRLAADELIILEPRQAPMVSPLS
LRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLAADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLG
RSILSLKPHTTRLRIIAHSDHARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALIYADSTGSQGIDIRS

Sequences:

>Translated_240_residues
MVQKDAQASPATRKADQVYTQIRSEIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRLAADELIILEPRQAPMVSPLS
LRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLAADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLG
RSILSLKPHTTRLRIIAHSDHARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALIYADSTGSQGIDIRS
>Mature_240_residues
MVQKDAQASPATRKADQVYTQIRSEIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRLAADELIILEPRQAPMVSPLS
LRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLAADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLG
RSILSLKPHTTRLRIIAHSDHARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALIYADSTGSQGIDIRS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26710; Mature: 26710

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQKDAQASPATRKADQVYTQIRSEIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCCCCCHHHHHHHH
AADELIILEPRQAPMVSPLSLRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLA
CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
ADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLGRSILSLKPHTTRLRIIAHSD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECC
HARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALIYADSTGSQGIDIRS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MVQKDAQASPATRKADQVYTQIRSEIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCCCCCHHHHHHHH
AADELIILEPRQAPMVSPLSLRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLA
CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
ADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLGRSILSLKPHTTRLRIIAHSD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECC
HARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALIYADSTGSQGIDIRS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]