Click here to switch to the map view.

The map label for this gene is ybdB [C]

Identifier: 145294708

GI number: 145294708

Start: 713278

End: 713679

Strand: Reverse

Name: ybdB [C]

Synonym: cgR_0656

Alternate gene names: 145294708

Gene position: 713679-713278 (Counterclockwise)

Preceding gene: 145294710

Following gene: 145294697

Centisome position: 21.53

GC content: 54.23

Gene sequence:

>402_bases
ATGGAACAGGAACTGTGGACTATTCAGCTCGGTGAGCTGGATAAGAAAATGGGTGTAGAAGTCCTCGAACAATCAGCCAA
CAAAGTTGTCGCTCGCATGCCTATCGATGGCAACCGACAGTCTTTAGGTCTGCTTCACGGCGGGGCCATGGTGTCACTGG
CAGAAGCTGTAGGCAGTTGGGCCGCTGTCATTCACGCTTCATCCATGGGCAAGGTTGCCGTTGGTGTGGATATCAACGCT
ACTCATCACGCCTCGGGCCTCAAGGGATATGTCACCGCAACCGCCACAGCGATCCGCCTCGGGCGGACCCTGACGAGCCA
CGAAGTAGTTCTTCATGATGACGCAGGCAAAAGGTTGTGTACTGCCAGAATTACGAACGCAATCGTCGATAAGCGAGCTT
AG

Upstream 100 bases:

>100_bases
AGAGCAAATAATTACACTTACCGACCGTACGGTAAGTAATATGGGTCAGTATAACGCACTTCACACTTTTGGTGAAGAAC
AATTCTTTTAAAGGAGAACA

Downstream 100 bases:

>100_bases
GCGCTGTAGTCGTAGAAGCCTTTACCCGACTTGCGGCCCAGTTCCCCGCGCGCAACCATGTCGCGCATCAACTGTGGCGG
CGTGAAGTTAGCACCCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MEQELWTIQLGELDKKMGVEVLEQSANKVVARMPIDGNRQSLGLLHGGAMVSLAEAVGSWAAVIHASSMGKVAVGVDINA
THHASGLKGYVTATATAIRLGRTLTSHEVVLHDDAGKRLCTARITNAIVDKRA

Sequences:

>Translated_133_residues
MEQELWTIQLGELDKKMGVEVLEQSANKVVARMPIDGNRQSLGLLHGGAMVSLAEAVGSWAAVIHASSMGKVAVGVDINA
THHASGLKGYVTATATAIRLGRTLTSHEVVLHDDAGKRLCTARITNAIVDKRA
>Mature_133_residues
MEQELWTIQLGELDKKMGVEVLEQSANKVVARMPIDGNRQSLGLLHGGAMVSLAEAVGSWAAVIHASSMGKVAVGVDINA
THHASGLKGYVTATATAIRLGRTLTSHEVVLHDDAGKRLCTARITNAIVDKRA

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase PaaI family [H]

Homologues:

Organism=Escherichia coli, GI1786813, Length=122, Percent_Identity=38.5245901639344, Blast_Score=80, Evalue=5e-17,
Organism=Escherichia coli, GI1787976, Length=100, Percent_Identity=39, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003736
- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 14065; Mature: 14065

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQELWTIQLGELDKKMGVEVLEQSANKVVARMPIDGNRQSLGLLHGGAMVSLAEAVGSW
CCCCEEEEECCCCCHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCHHHHHHHHHHHH
AAVIHASSMGKVAVGVDINATHHASGLKGYVTATATAIRLGRTLTSHEVVLHDDAGKRLC
HEEEEECCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
TARITNAIVDKRA
HHHHHHHHHCCCC
>Mature Secondary Structure
MEQELWTIQLGELDKKMGVEVLEQSANKVVARMPIDGNRQSLGLLHGGAMVSLAEAVGSW
CCCCEEEEECCCCCHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCHHHHHHHHHHHH
AAVIHASSMGKVAVGVDINATHHASGLKGYVTATATAIRLGRTLTSHEVVLHDDAGKRLC
HEEEEECCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
TARITNAIVDKRA
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]