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The map label for this gene is rarD [C]

Identifier: 145294255

GI number: 145294255

Start: 229749

End: 230630

Strand: Reverse

Name: rarD [C]

Synonym: cgR_0211

Alternate gene names: 145294255

Gene position: 230630-229749 (Counterclockwise)

Preceding gene: 145294258

Following gene: 145294250

Centisome position: 6.96

GC content: 48.87

Gene sequence:

>882_bases
GTGGCAACAAATCGTACATCTTCCGCCGGCGTCATCATGTCTGTCCTCGCATCCGCTTTATTCGGAGCGATCTTTTTCAT
CTCTGGGGCGATTGAAGCAAAGGCGGAAACACTTGTTGCTTGGCGTGTCCTTTTAACGGCCGCATGTTATTTGATTGCTC
TTTTACACCCTGCTGGCCGGAAAGTGTTTAAGGAATTTTGGGACACACTAAGGTCCCAACCTCGTCAAATTCTGTACTTC
ATCTGTCTTGTTGCACTCATTGCGCTTCAATTGTGGCTATTTTCTTGGTCGCCAAAGAGTCATGCTTTAGATGCCTCACT
TGGTTACCTTTTGCTGCCCATTTTCCTAGTGATTGTGGGGCGGTTTTTCTTCGCTGATTACATCACCAGGCTGCAGTGGA
TTGCGGTGGGTATCGCGCTGATCGCAGTGACCTTAAAATTTGTCACTAGTGCGCAGCTTTCATGGGTAACTTTTGCCATC
GCTGCGGGTTATGCACTGTATTTTGCGCTTCGTAAATACTCGGGGCTGAACAACGCTTTTGCTTACGGCGCAGAAGTTTT
AGCGTTAAGTCCCCTGGCATTTTTCATGCTCGCCACTGTCGAGGATCCGCTGTCTAACGCCATGTTGTCAATGGTTATTC
TGGCGGGCCTCGCTGGCGCATTAGCTATGGCGTTGTATCTAGCCGCCTCAACTCTGCTTAGTATGCCGATGTTTGGCCTG
CTCAGTTATGGTGAACCAATCTTGCTGTTTGTTGCAGCGTTATTGCTGGGTGAAACCTTGAATCTCAGCGACGCAATTGT
CTACTCACTACTTGCGTGCGCCCTGGCGTTACTGGGATTTGATGGAATGAGAAGGTCTCGCAAAAACCTCGAGTCCGATT
AA

Upstream 100 bases:

>100_bases
GGCCAGGTTCGGTTAGTGCGCGATCTCCCTGATCTCTGACTCATACATCCAATAAGATCCAGACATATGCAAAGCTAATG
AAAGAAACAAGGAGCTGATA

Downstream 100 bases:

>100_bases
CTTCCGATTCGCTTCCGATCGACTTCCCACCAATTAAGACCGCTAAACCAATTCCATGATGCCTCGGAACAACACCACTG
CGGCACCAGCTGCTGCTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MATNRTSSAGVIMSVLASALFGAIFFISGAIEAKAETLVAWRVLLTAACYLIALLHPAGRKVFKEFWDTLRSQPRQILYF
ICLVALIALQLWLFSWSPKSHALDASLGYLLLPIFLVIVGRFFFADYITRLQWIAVGIALIAVTLKFVTSAQLSWVTFAI
AAGYALYFALRKYSGLNNAFAYGAEVLALSPLAFFMLATVEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGL
LSYGEPILLFVAALLLGETLNLSDAIVYSLLACALALLGFDGMRRSRKNLESD

Sequences:

>Translated_293_residues
MATNRTSSAGVIMSVLASALFGAIFFISGAIEAKAETLVAWRVLLTAACYLIALLHPAGRKVFKEFWDTLRSQPRQILYF
ICLVALIALQLWLFSWSPKSHALDASLGYLLLPIFLVIVGRFFFADYITRLQWIAVGIALIAVTLKFVTSAQLSWVTFAI
AAGYALYFALRKYSGLNNAFAYGAEVLALSPLAFFMLATVEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGL
LSYGEPILLFVAALLLGETLNLSDAIVYSLLACALALLGFDGMRRSRKNLESD
>Mature_292_residues
ATNRTSSAGVIMSVLASALFGAIFFISGAIEAKAETLVAWRVLLTAACYLIALLHPAGRKVFKEFWDTLRSQPRQILYFI
CLVALIALQLWLFSWSPKSHALDASLGYLLLPIFLVIVGRFFFADYITRLQWIAVGIALIAVTLKFVTSAQLSWVTFAIA
AGYALYFALRKYSGLNNAFAYGAEVLALSPLAFFMLATVEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGLL
SYGEPILLFVAALLLGETLNLSDAIVYSLLACALALLGFDGMRRSRKNLESD

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=231, Percent_Identity=25.974025974026, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31780; Mature: 31649

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNRTSSAGVIMSVLASALFGAIFFISGAIEAKAETLVAWRVLLTAACYLIALLHPAGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVFKEFWDTLRSQPRQILYFICLVALIALQLWLFSWSPKSHALDASLGYLLLPIFLVIVG
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
RFFFADYITRLQWIAVGIALIAVTLKFVTSAQLSWVTFAIAAGYALYFALRKYSGLNNAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AYGAEVLALSPLAFFMLATVEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYGEPILLFVAALLLGETLNLSDAIVYSLLACALALLGFDGMRRSRKNLESD
HHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure 
ATNRTSSAGVIMSVLASALFGAIFFISGAIEAKAETLVAWRVLLTAACYLIALLHPAGR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVFKEFWDTLRSQPRQILYFICLVALIALQLWLFSWSPKSHALDASLGYLLLPIFLVIVG
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
RFFFADYITRLQWIAVGIALIAVTLKFVTSAQLSWVTFAIAAGYALYFALRKYSGLNNAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AYGAEVLALSPLAFFMLATVEDPLSNAMLSMVILAGLAGALAMALYLAASTLLSMPMFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYGEPILLFVAALLLGETLNLSDAIVYSLLACALALLGFDGMRRSRKNLESD
HHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]