Click here to switch to the map view.

The map label for this gene is ygbI [C]

Identifier: 145294250

GI number: 145294250

Start: 225357

End: 226034

Strand: Reverse

Name: ygbI [C]

Synonym: cgR_0206

Alternate gene names: 145294250

Gene position: 226034-225357 (Counterclockwise)

Preceding gene: 145294255

Following gene: 145294244

Centisome position: 6.82

GC content: 49.56

Gene sequence:

>678_bases
ATGACAGTTCGCCGAGATATTGCAGCTTTGGAAGAATCCGGCCAAGTTGTTTCCATCAAGGGTGGTGTCAAACTTTCTGA
AGGCATTTCCACACCGGTCCCCCTCGACCGTGCCAGCAGATTAGCCCTTGAACTGCATCGCAAAGAAGCTATTGCCAGGG
AAGCCGCCGATCGAGTTACCGATGGCATGACAATTTTTCTAGATGCCGGAACAACGCTGCAGGCCCTAGTCCCCTATCTT
GAGCCTCGACAAAATCTCACAGTCATAACCAATGACCTTTTCGTCGCCACCACGTTGTTCAACTACCCGCATATTCGCAC
CATTCAAACTGGTGGCACTATTGATCCTGAGATTGGTGCATGCCAAGGACATTTAGCTGCACGCAGCGTGGAGATTTTCA
ACTTCGACATCGCCTTCATTTCATCCTCAGGTTGGTCACTGAACCGAGGTTTGACCGCTCCCGCGGAAGAGAAACGCCTT
CTAAAAAGAAAAGTGATGGAAGTGTCAACCACATCAACTCTTCTGGCTGACACAACAAAGTACGGTGTGATCTCCATGGT
GACGGTATGCCCGTTGGATGAAATTGACGCAATCATCACAGACTGGGGTTTAGATTCCCAAACGATCGAGCGCATTCATG
AGCTGGGAGTTAATCTCACGGTCGCTCAAGAAATCTAG

Upstream 100 bases:

>100_bases
ACTCATTCCGGAACAACGCCAACAAAAAATCACATCAGCACTGCGACAAAGTGGGGCGCTAAGTATTCGAGCGCTTTCGC
AGCAGCTCAATGTCTCCCAA

Downstream 100 bases:

>100_bases
CGCTTGTAGTCAACCTCTCCCAGCGGCAGCGGTTGTGGGTTTTGTGCGACCCATTTGGTGGCTAACCGTGGAAGGGTGTC
GATCTCCTCCTCGTTGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTVRRDIAALEESGQVVSIKGGVKLSEGISTPVPLDRASRLALELHRKEAIAREAADRVTDGMTIFLDAGTTLQALVPYL
EPRQNLTVITNDLFVATTLFNYPHIRTIQTGGTIDPEIGACQGHLAARSVEIFNFDIAFISSSGWSLNRGLTAPAEEKRL
LKRKVMEVSTTSTLLADTTKYGVISMVTVCPLDEIDAIITDWGLDSQTIERIHELGVNLTVAQEI

Sequences:

>Translated_225_residues
MTVRRDIAALEESGQVVSIKGGVKLSEGISTPVPLDRASRLALELHRKEAIAREAADRVTDGMTIFLDAGTTLQALVPYL
EPRQNLTVITNDLFVATTLFNYPHIRTIQTGGTIDPEIGACQGHLAARSVEIFNFDIAFISSSGWSLNRGLTAPAEEKRL
LKRKVMEVSTTSTLLADTTKYGVISMVTVCPLDEIDAIITDWGLDSQTIERIHELGVNLTVAQEI
>Mature_224_residues
TVRRDIAALEESGQVVSIKGGVKLSEGISTPVPLDRASRLALELHRKEAIAREAADRVTDGMTIFLDAGTTLQALVPYLE
PRQNLTVITNDLFVATTLFNYPHIRTIQTGGTIDPEIGACQGHLAARSVEIFNFDIAFISSSGWSLNRGLTAPAEEKRLL
KRKVMEVSTTSTLLADTTKYGVISMVTVCPLDEIDAIITDWGLDSQTIERIHELGVNLTVAQEI

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=223, Percent_Identity=39.0134529147982, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789059, Length=224, Percent_Identity=33.9285714285714, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1789519, Length=224, Percent_Identity=25.4464285714286, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789829, Length=201, Percent_Identity=31.3432835820896, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788069, Length=202, Percent_Identity=27.7227722772277, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1790753, Length=178, Percent_Identity=30.3370786516854, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082344, Length=223, Percent_Identity=28.2511210762332, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789170, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787540, Length=203, Percent_Identity=25.1231527093596, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787063, Length=211, Percent_Identity=25.5924170616114, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 24533; Mature: 24402

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRRDIAALEESGQVVSIKGGVKLSEGISTPVPLDRASRLALELHRKEAIAREAADRVT
CCCHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
DGMTIFLDAGTTLQALVPYLEPRQNLTVITNDLFVATTLFNYPHIRTIQTGGTIDPEIGA
CCEEEEEECCCHHHHHHHHCCCCCCEEEEECCEEEEEHHHCCCCEEEEECCCCCCCCCCC
CQGHLAARSVEIFNFDIAFISSSGWSLNRGLTAPAEEKRLLKRKVMEVSTTSTLLADTTK
CCCCHHHEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCC
YGVISMVTVCPLDEIDAIITDWGLDSQTIERIHELGVNLTVAQEI
CCCEEHEECCCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCC
>Mature Secondary Structure 
TVRRDIAALEESGQVVSIKGGVKLSEGISTPVPLDRASRLALELHRKEAIAREAADRVT
CCHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
DGMTIFLDAGTTLQALVPYLEPRQNLTVITNDLFVATTLFNYPHIRTIQTGGTIDPEIGA
CCEEEEEECCCHHHHHHHHCCCCCCEEEEECCEEEEEHHHCCCCEEEEECCCCCCCCCCC
CQGHLAARSVEIFNFDIAFISSSGWSLNRGLTAPAEEKRLLKRKVMEVSTTSTLLADTTK
CCCCHHHEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCC
YGVISMVTVCPLDEIDAIITDWGLDSQTIERIHELGVNLTVAQEI
CCCEEHEECCCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]