Click here to switch to the map view.

The map label for this gene is citT [H]

Identifier: 145294131

GI number: 145294131

Start: 100816

End: 101472

Strand: Direct

Name: citT [H]

Synonym: cgR_0089

Alternate gene names: 145294131

Gene position: 100816-101472 (Clockwise)

Preceding gene: 145294130

Following gene: 145294133

Centisome position: 3.04

GC content: 55.25

Gene sequence:

>657_bases
ATGGATCAAACACTTAAAGTTTTAGTAATTGATGATGATTTCCGCGTCGCTGGCATTCACGCCTCCATCGTTGATGCGTC
CCCTGGATTTTCGGTGGTCGGTACCGCGCGTACCCTCGCAGAGGCAAAAACCCTGATCGCCACATTTTCCCCGGATCTCC
TACTTGTTGATGTCTACCTCCCCGACGGCGATGGCATTGACCTCGTGGGCACCTCCAATATTGATGCGTTTGTGCTCAGC
GCAGCCGATGACATCAAAACAGTTCGACGCGCCATGCGTGCCGGGGCACTCGGATATCTGCTCAAACCATTTCCCCAAAA
ACGTCTCGTGGAACGCCTTGACCGTTACGTCCGCTACCGCCATGTCTTATCCGGCACCCAAGGACTTTCCCAAGACAAAA
TTGACCAGGCAACCGCAATCCTCAACGGCACCCAAGCGCCGGTCACCGTCTCTAGATCCGCCACAGAGCAATTACTTCTC
GACGCCCTGGAAGGCCAAGAACTCTCCGCAACAGAAGCTTCCGAAGCTGCCGGAGTTTCACGTGCCACAGCACAGCGCAG
GCTGGCAGCGATGGCTAGCCAAGGTGTGATCCAGGTTCGTCTTCGGTACGGACAGTCCGGGCGACCAGAACATCTATATT
CAAAGCCACTGCTCTAG

Upstream 100 bases:

>100_bases
GGGCTTTGGCTAGATCACATGGTGGCGATGTCTGGGTCATTGATAGAGGAACCGAAGATGGCGCTGTATTTGGAGTGAAA
CTACCGGGAGTAATGGAGTA

Downstream 100 bases:

>100_bases
TAACCTTTGTGGATGTCCACCTCGGTCAGCATCTTTTCTCCAGCGAGCAACCGTCGGTAGTTTTCTGCCACCACTGGGGC
AAGCATGCGATCCATCGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDQTLKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSPDLLLVDVYLPDGDGIDLVGTSNIDAFVLS
AADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYVRYRHVLSGTQGLSQDKIDQATAILNGTQAPVTVSRSATEQLLL
DALEGQELSATEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLYSKPLL

Sequences:

>Translated_218_residues
MDQTLKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSPDLLLVDVYLPDGDGIDLVGTSNIDAFVLS
AADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYVRYRHVLSGTQGLSQDKIDQATAILNGTQAPVTVSRSATEQLLL
DALEGQELSATEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLYSKPLL
>Mature_218_residues
MDQTLKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSPDLLLVDVYLPDGDGIDLVGTSNIDAFVLS
AADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYVRYRHVLSGTQGLSQDKIDQATAILNGTQAPVTVSRSATEQLLL
DALEGQELSATEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLYSKPLL

Specific function: Member of the two-component regulatory system CitT/CitS [H]

COG id: COG4565

COG function: function code KT; Response regulator of citrate/malate metabolism

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786838, Length=225, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790566, Length=226, Percent_Identity=30.5309734513274, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23447; Mature: 23447

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQTLKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSPDLLLVDVYL
CCCEEEEEEEECCCEEEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEEE
PDGDGIDLVGTSNIDAFVLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYVRYR
CCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHH
HVLSGTQGLSQDKIDQATAILNGTQAPVTVSRSATEQLLLDALEGQELSATEASEAAGVS
HHHHCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCHHHHCCHH
RATAQRRLAAMASQGVIQVRLRYGQSGRPEHLYSKPLL
HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDQTLKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSPDLLLVDVYL
CCCEEEEEEEECCCEEEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEEE
PDGDGIDLVGTSNIDAFVLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYVRYR
CCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHH
HVLSGTQGLSQDKIDQATAILNGTQAPVTVSRSATEQLLLDALEGQELSATEASEAAGVS
HHHHCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCHHHHCCHH
RATAQRRLAAMASQGVIQVRLRYGQSGRPEHLYSKPLL
HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10484179; 11058132 [H]