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The map label for this gene is allR [H]

Identifier: 145294108

GI number: 145294108

Start: 76511

End: 77314

Strand: Reverse

Name: allR [H]

Synonym: cgR_0066

Alternate gene names: 145294108

Gene position: 77314-76511 (Counterclockwise)

Preceding gene: 145294110

Following gene: 145294106

Centisome position: 2.33

GC content: 50.25

Gene sequence:

>804_bases
ATGGCCAATTCCCCATCTGGCGAATCCATGATCGCTCGAGTCGTGCGCCTTTTATCTGTGTTCCCCAAGTACAACCGCCC
ATTGAGCGTCCGGGAAATTGCAGAGTATGCCTCGCTCCCAGTAACTACTACTCACCGGTTGCTCAAGGAGTTGGAGGCAG
AAGATTTAGTAACCCGCATGACCGATGGCGGATGGCAACACGGCACTAGGTTGTGGGAAATTGCCTCCCGAAACTCTCCA
GTTCAATCGCTGAGGGATGCTGCACTTCCTCCAATGGAAGATCTAGTCGCAGGACTTCGAGTCCATGTTTCTTTGGCTAT
TTTGGACCGCCATGAAGTGCTTTATTTGGAGAGAATTACTCCGGATGATTACACAGTTAACATCACGTCGGTGGCGGGTA
GGTTGCCTGCACATGCTACTTCCGCTGGTTTAGTGCTTCACGCTTTTGGTTCGCAAGAAGGTCAACGGTTGTTTTTAAGC
CGTGGTCATGCGCGTTTTACAGAAACTACTCCCACGGAGATTGAGCAGTTGAAGGAGAAGCTAAGTCGTGCACGCATCGA
TGGTTTTGTAGCTTCACTAGGAACAATCATCCCTGAATCTACGGGTATTTCTGTGCCCATTTTCGGGCCTAAGAAGCTTG
CGATTGCTGCTCTCACCGTCATTGTTCCGATCGGGGATGAAGATTTGGATCTCATTGTCCCGCAAATGAAAATCACCGCC
AGAGCGATCCAGCGGCGTACAGGAGTTGTCCCAGAAATAAATTCGAGGGTGACGCGTGAAACTAGACAGTCACCCTTGGG
ATAA

Upstream 100 bases:

>100_bases
CGGCCGTCAGAAAAATTGCAAGAGTGGAACCAGGGTTAAGGTCCTGCGGTAGCTCCACGAAAAACCAAATACCTCAATCC
AGTCCAATATGATGGTCGAT

Downstream 100 bases:

>100_bases
GTACTTATTGATCATCTCGCAGGTTGTTACCTGCGGTTTCTCCACCATCAATTACAAAGCTGCTGCCTGTCACAAATGAG
GACTCATCGGAAGACAAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: Negative regulator of allantoin and glyoxylate utilization operons [H]

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MANSPSGESMIARVVRLLSVFPKYNRPLSVREIAEYASLPVTTTHRLLKELEAEDLVTRMTDGGWQHGTRLWEIASRNSP
VQSLRDAALPPMEDLVAGLRVHVSLAILDRHEVLYLERITPDDYTVNITSVAGRLPAHATSAGLVLHAFGSQEGQRLFLS
RGHARFTETTPTEIEQLKEKLSRARIDGFVASLGTIIPESTGISVPIFGPKKLAIAALTVIVPIGDEDLDLIVPQMKITA
RAIQRRTGVVPEINSRVTRETRQSPLG

Sequences:

>Translated_267_residues
MANSPSGESMIARVVRLLSVFPKYNRPLSVREIAEYASLPVTTTHRLLKELEAEDLVTRMTDGGWQHGTRLWEIASRNSP
VQSLRDAALPPMEDLVAGLRVHVSLAILDRHEVLYLERITPDDYTVNITSVAGRLPAHATSAGLVLHAFGSQEGQRLFLS
RGHARFTETTPTEIEQLKEKLSRARIDGFVASLGTIIPESTGISVPIFGPKKLAIAALTVIVPIGDEDLDLIVPQMKITA
RAIQRRTGVVPEINSRVTRETRQSPLG
>Mature_266_residues
ANSPSGESMIARVVRLLSVFPKYNRPLSVREIAEYASLPVTTTHRLLKELEAEDLVTRMTDGGWQHGTRLWEIASRNSPV
QSLRDAALPPMEDLVAGLRVHVSLAILDRHEVLYLERITPDDYTVNITSVAGRLPAHATSAGLVLHAFGSQEGQRLFLSR
GHARFTETTPTEIEQLKEKLSRARIDGFVASLGTIIPESTGISVPIFGPKKLAIAALTVIVPIGDEDLDLIVPQMKITAR
AIQRRTGVVPEINSRVTRETRQSPLG

Specific function: Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS- allA intergenic region [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786715, Length=248, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082359, Length=183, Percent_Identity=26.775956284153, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786468, Length=243, Percent_Identity=25.1028806584362, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29349; Mature: 29218

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSPSGESMIARVVRLLSVFPKYNRPLSVREIAEYASLPVTTTHRLLKELEAEDLVTRM
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TDGGWQHGTRLWEIASRNSPVQSLRDAALPPMEDLVAGLRVHVSLAILDRHEVLYLERIT
CCCCCHHCCHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHEEEEEEECCCEEEEEEECC
PDDYTVNITSVAGRLPAHATSAGLVLHAFGSQEGQRLFLSRGHARFTETTPTEIEQLKEK
CCCEEEEEHHHHCCCCCCCCCCCEEEEECCCCCCCEEHHHCCCCCCCCCCHHHHHHHHHH
LSRARIDGFVASLGTIIPESTGISVPIFGPKKLAIAALTVIVPIGDEDLDLIVPQMKITA
HHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHEEEEEEEECCCCCCEEECCHHHHHH
RAIQRRTGVVPEINSRVTRETRQSPLG
HHHHHHCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ANSPSGESMIARVVRLLSVFPKYNRPLSVREIAEYASLPVTTTHRLLKELEAEDLVTRM
CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TDGGWQHGTRLWEIASRNSPVQSLRDAALPPMEDLVAGLRVHVSLAILDRHEVLYLERIT
CCCCCHHCCHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHEEEEEEECCCEEEEEEECC
PDDYTVNITSVAGRLPAHATSAGLVLHAFGSQEGQRLFLSRGHARFTETTPTEIEQLKEK
CCCEEEEEHHHHCCCCCCCCCCCEEEEECCCCCCCEEHHHCCCCCCCCCCHHHHHHHHHH
LSRARIDGFVASLGTIIPESTGISVPIFGPKKLAIAALTVIVPIGDEDLDLIVPQMKITA
HHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHEEEEEEEECCCCCCEEECCHHHHHH
RAIQRRTGVVPEINSRVTRETRQSPLG
HHHHHHCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA