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The map label for this gene is ripA [H]

Identifier: 145294092

GI number: 145294092

Start: 56688

End: 58112

Strand: Reverse

Name: ripA [H]

Synonym: cgR_0050

Alternate gene names: 145294092

Gene position: 58112-56688 (Counterclockwise)

Preceding gene: 145294094

Following gene: 145294089

Centisome position: 1.75

GC content: 50.88

Gene sequence:

>1425_bases
GTGTTCCTAAACCGCCACGTTGTTACCATCACCCCCAACGCAGTCTTAATCTGGGTTTATAGCGGGCAGGTGCGCATCAC
CAACGGCTCAACATTTGAGCTTTCCGCAGCTCACGGCATTCTCATCCCCGCTGGAAGTGACATAACAATTGAATACTCCG
AAGACTCGCTCGTCATTCCGATTCAATTACCCAACCAGTGCAGGCCTAACCTTGGTGTGTTGCGCATTCCAGACGATGCT
CACAATCGGTTGATGTACGCCTTTGCACAAGGACTCGGCTACCTAAAAGAAAACCCAGAATCCGACGCTTTCCTCGTTGA
TCTTGTCGAGGCAGTCCCCCAGCAATACAGCATCACACCATCAAAGCCTCATTCTCCGGAGGCGTTGAAAGCCAGTCAAA
TTATCATCGACGACCCTGCAACCACCGTTCCGATCGCAGAGATCGTCCATCGAGTAGGCCTGAGTGAACGTACTTTGCAG
CGCCGTTTTTTCGATGAAACAGGACTTAACATCAGCACCTGGAGAACACGCACCCGTTTAAGCCTTGCAGTTGCGTATCT
TTCCGATGGTCACAGCGCAGAATGGGCAGCTCACCACGTTGGTTTTTCTGGAGCAAGCAGCCTCTCCAAAGCATTTCGCA
CTCATATGGTGATCTCACCCAGTCAAATTCTTACACTTCCGCAACCCGAGCACCTTGATCCGCCGCTGCCACTTCTTGGA
TCTTTAGAGATTCCAGCAAATGAAACATGGTCTCGGATCAATGGATCTCACATCATGGTGTGGGCTTTTCAAGGAACATC
CACCGTTCGAGTAGCTGATAGAGAACTCACTGTTCATCAAGGTGAAGGGTTGATTCTTCCAGCTGGAATGCGTCTGGATC
TTCACACTCCTGCGGGCGGACTTATGTTGCCGTTGGGCTACCAAGTTCCAGATTCCCATTCAATCAGTGCCCAACATGTG
GACATCATTCAGTTTGATTGCTCTATTCAGCAGCTTTTGCAATGCACGATTTCTGCCTACACTCCTTTTCACCCACACAA
AGCGGCCCCGGATCAGTGCTTCTCCCTGCCTTTTCAAAAAAGCTCCACGAAAAATACGGAAAACGCCCCAACTGAAAGTC
ACAACGATGAGTTAGTTTCTCTGGCTGTTGATCTTGCAGTCTCCCGAGAAACTAATGTTTCTGCTATTCGCGGCGGAATT
GCGGAAGAGTTTGCACACATCACTGGCATTGCGGTGCAGCGCTGGGGACTTCTGCGAAGAATGAGTTTGGCGCGCATTCA
ATTAAGCAAAGGGCTAAGCCCGGGGGTAGTCGCACGGAACCTCGGATACTCACACTTACCTGCTTTCAACCGTGCTTTCA
CCGCCACTCATGGTTGCACACCGATGCAGTACCAAGCTGACTGTGCGCGCATCCCTACCCCCTGA

Upstream 100 bases:

>100_bases
CCATGCCGATGGCGAGCAGTTTTAAAGTACGTGACATACATCCTCTTTTTCACTTCTGAAATTACTTGAAAATAAACATA
GCCTCCCCTAACTTGATGTT

Downstream 100 bases:

>100_bases
GTTATCCACAGGGGTTCGGAGTTATACACATCGATCTGTGGACAAGTGTGTGTTAATCGCTTTTCCTCAAGTTATCCACA
GGCTGTGGAACAAGTTGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MFLNRHVVTITPNAVLIWVYSGQVRITNGSTFELSAAHGILIPAGSDITIEYSEDSLVIPIQLPNQCRPNLGVLRIPDDA
HNRLMYAFAQGLGYLKENPESDAFLVDLVEAVPQQYSITPSKPHSPEALKASQIIIDDPATTVPIAEIVHRVGLSERTLQ
RRFFDETGLNISTWRTRTRLSLAVAYLSDGHSAEWAAHHVGFSGASSLSKAFRTHMVISPSQILTLPQPEHLDPPLPLLG
SLEIPANETWSRINGSHIMVWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAGGLMLPLGYQVPDSHSISAQHV
DIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFQKSSTKNTENAPTESHNDELVSLAVDLAVSRETNVSAIRGGI
AEEFAHITGIAVQRWGLLRRMSLARIQLSKGLSPGVVARNLGYSHLPAFNRAFTATHGCTPMQYQADCARIPTP

Sequences:

>Translated_474_residues
MFLNRHVVTITPNAVLIWVYSGQVRITNGSTFELSAAHGILIPAGSDITIEYSEDSLVIPIQLPNQCRPNLGVLRIPDDA
HNRLMYAFAQGLGYLKENPESDAFLVDLVEAVPQQYSITPSKPHSPEALKASQIIIDDPATTVPIAEIVHRVGLSERTLQ
RRFFDETGLNISTWRTRTRLSLAVAYLSDGHSAEWAAHHVGFSGASSLSKAFRTHMVISPSQILTLPQPEHLDPPLPLLG
SLEIPANETWSRINGSHIMVWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAGGLMLPLGYQVPDSHSISAQHV
DIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFQKSSTKNTENAPTESHNDELVSLAVDLAVSRETNVSAIRGGI
AEEFAHITGIAVQRWGLLRRMSLARIQLSKGLSPGVVARNLGYSHLPAFNRAFTATHGCTPMQYQADCARIPTP
>Mature_474_residues
MFLNRHVVTITPNAVLIWVYSGQVRITNGSTFELSAAHGILIPAGSDITIEYSEDSLVIPIQLPNQCRPNLGVLRIPDDA
HNRLMYAFAQGLGYLKENPESDAFLVDLVEAVPQQYSITPSKPHSPEALKASQIIIDDPATTVPIAEIVHRVGLSERTLQ
RRFFDETGLNISTWRTRTRLSLAVAYLSDGHSAEWAAHHVGFSGASSLSKAFRTHMVISPSQILTLPQPEHLDPPLPLLG
SLEIPANETWSRINGSHIMVWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAGGLMLPLGYQVPDSHSISAQHV
DIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFQKSSTKNTENAPTESHNDELVSLAVDLAVSRETNVSAIRGGI
AEEFAHITGIAVQRWGLLRRMSLARIQLSKGLSPGVVARNLGYSHLPAFNRAFTATHGCTPMQYQADCARIPTP

Specific function: Under iron limitation, represses the acn (aconitase), catA (catechol 1,2 dioxygenase), leuCD (isopropylmalate dehydratase), narKGHJI (nitrite/nitrate transporter and nitrate reductase), sdhCAB (succinate dehydrogenase), pta (phosphotransacetylase) and kat

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 51872; Mature: 51872

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLNRHVVTITPNAVLIWVYSGQVRITNGSTFELSAAHGILIPAGSDITIEYSEDSLVIP
CCCCCEEEEECCCEEEEEEEECEEEEECCCEEEEECCCEEEEECCCCEEEEECCCCEEEE
IQLPNQCRPNLGVLRIPDDAHNRLMYAFAQGLGYLKENPESDAFLVDLVEAVPQQYSITP
EECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECCC
SKPHSPEALKASQIIIDDPATTVPIAEIVHRVGLSERTLQRRFFDETGLNISTWRTRTRL
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCHHEE
SLAVAYLSDGHSAEWAAHHVGFSGASSLSKAFRTHMVISPSQILTLPQPEHLDPPLPLLG
EEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHEEEECHHHEEECCCCCCCCCCCCCCE
SLEIPANETWSRINGSHIMVWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAGG
EEECCCCCHHHHCCCCEEEEEEECCCCEEEEECCEEEEECCCCEEEECCCEEEEECCCCC
LMLPLGYQVPDSHSISAQHVDIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFQK
EEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
SSTKNTENAPTESHNDELVSLAVDLAVSRETNVSAIRGGIAEEFAHITGIAVQRWGLLRR
CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH
MSLARIQLSKGLSPGVVARNLGYSHLPAFNRAFTATHGCTPMQYQADCARIPTP
HHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFLNRHVVTITPNAVLIWVYSGQVRITNGSTFELSAAHGILIPAGSDITIEYSEDSLVIP
CCCCCEEEEECCCEEEEEEEECEEEEECCCEEEEECCCEEEEECCCCEEEEECCCCEEEE
IQLPNQCRPNLGVLRIPDDAHNRLMYAFAQGLGYLKENPESDAFLVDLVEAVPQQYSITP
EECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECCC
SKPHSPEALKASQIIIDDPATTVPIAEIVHRVGLSERTLQRRFFDETGLNISTWRTRTRL
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCHHEE
SLAVAYLSDGHSAEWAAHHVGFSGASSLSKAFRTHMVISPSQILTLPQPEHLDPPLPLLG
EEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHEEEECHHHEEECCCCCCCCCCCCCCE
SLEIPANETWSRINGSHIMVWAFQGTSTVRVADRELTVHQGEGLILPAGMRLDLHTPAGG
EEECCCCCHHHHCCCCEEEEEEECCCCEEEEECCEEEEECCCCEEEECCCEEEEECCCCC
LMLPLGYQVPDSHSISAQHVDIIQFDCSIQQLLQCTISAYTPFHPHKAAPDQCFSLPFQK
EEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
SSTKNTENAPTESHNDELVSLAVDLAVSRETNVSAIRGGIAEEFAHITGIAVQRWGLLRR
CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH
MSLARIQLSKGLSPGVVARNLGYSHLPAFNRAFTATHGCTPMQYQADCARIPTP
HHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]