| Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
|---|---|
| Accession | NC_009328 |
| Length | 3,550,319 |
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The map label for this gene is tnpB2 [H]
Identifier: 138897051
GI number: 138897051
Start: 3531102
End: 3533216
Strand: Direct
Name: tnpB2 [H]
Synonym: GTNG_3422
Alternate gene names: 138897051
Gene position: 3531102-3533216 (Clockwise)
Preceding gene: 138897050
Following gene: 138897052
Centisome position: 99.46
GC content: 35.13
Gene sequence:
>2115_bases ATGAGTATTCAACAGCACCATATCCATGATGAATTAGGCTTTCATGAACGATTACAGCAAGAGTTATCGACCTATACAGA AAAAATCATTCACGAAGATGGCTCGGTCACAACCAATGTTGTGCAAAATCCTTACTTCTTAGTCAACGATACATGGAATG TCAATGTAATTGGAACGATTCCTAACTTCAAAGAACAATTTTCAAATTATAAGCAAAGAGCTAAAAATATTCGATTTGAA GTGAAAAGTCCATCCGTTAACTTGGAAATCAAGTATGTGTGGTACAACAAGTTATTTCGGGATGAATGGACTTTAACGAG TGCTTTTGTAGGACAAACCTCACACCTTAGAAAATTGACAGCTTTCCTGAATGAAAAGTACCCTTCTTTGCATTCCCTTC TTGATTTGGAGATTGAGAAAGCAGAACGGGAATGGATGTTTTGGTTGTCTGAAAACGGGGTTCAAACACAATCCACTCAA CAACATATCCTTTATGGTAAAATTACACAAAAAACGCCAGTAGTAGGTTTTTTACGAGTGATTTATTCTTACCTCTTTCA ATTAACGGATACTCGTGAAGAATGGGAAAAAGACCGTTGGGATGTTCGAATTTTACAAGAAAAATACGGAATAGATTACA ACAAAAGTGACACTATTTACTATATTGATTTTACTAAAATTGAGCAAATTAACATACGAGAGCAAGTAAAGAAGTATATA AAACAACGTTTACTCAGTAAAAACAACTTTACATGGGGTACAGCACGCAATTATATGTTTTGTCTCCCACCGTTTATTAA ATTCATTTTTTCATTAGAGCCTACATGGAATGATTTGAAACAGTTAAAACGGTTTCATATGGAGCAATACATCCAATGGT TACGCGAATATACGAAAAAACATTTAAAACAGAAAAATGCAAATCCTGAAAGATATATTTCTGAAAGTTTGACTACCATA CAGAAGTTCTTAGGAGATATTCAACGGTATGAATATGATATCGCTCCTGAAACACCTGTAAAGTTGTTAATTTTTCCAGA GGATAAACCAAAACAAAAGAAGAAATCCATTGACCGAATTGACTATATTCCCGATTATGTATTAGAGCAACTATTCGCTC ATATCAATGACCTCTGTAAAGATGTTCAGCCCGTCATATGGGTAGCGTTTAAAACAGGATTGAGGATTTCCGATGTATTA GGTTTAAAACAAGATTGTTTAGTCAAACTAAACGGGAAATATTACATTGAAACCGATATTGAAAAAACTTATGTACAAGG GCATCGGGTTCCGATTGATGACGAATTAGCCAATATTCTTGCGGTATTAATTGATAAGTCCATAAAAAATAGCAATGATG ACAACAATCCTGAAAAGTATATTTTTGTTCGTTATCATGGTTCTCGCAAAGGAAAACCATATTCACAACATTGGGTTAAA GAAAAACTCAATTTATTAGCAAAAACCAAGCATATTACAGACGAAAATGGTCATGTGTTTCATTTTAAAACACATCAATT CCGCCACACCTATGCGGTCAAAATGTTAAATAGTGGAGCCGATATTCTAACGGTACAAGAATTATTAGCACACGCCTCAC CTGAAATGACCATGCGATACGCTAAGTTGTTGGATAATACCAAGCGTAAAGCCTTTGAGGAAGCGATAAAACAAGGTTTA TTTAGTTTTGACTTGAATGGTGAGGTTCGAGAAGTAAAACCCGATGAAGATATTCCAACTGATATTTTGGAAACGTTATG GCGTGACCATAAGTTGAATGCGATTGATAATCCATATGGAACTTGTCACGCAAGAATCAATGGAAAATGTCCGTTTGCGG CAGAACCACCATGCCTGACATGTAACGGTGGCAGCCCATGTAAAGATTTAGCTATCGGTTTTTCTGAGTTGGATATACAA AAGTATGAATTATTAATCAAAACAACCACAAAAACAATAGAAGCTTTGGAACAACGTGGCAGACATGACATGGTTGAAAA AAATAAAAAGAATTTAGAACGTTACGAGAAAATTTTGAGCACCATTAAAGAAGGAAATATCATCTTTGGGCGATTAGAAC GAATCAAACGAAAGCAAGGTGTTTCCAATGGCTAA
Upstream 100 bases:
>100_bases ACTTGTACCTCCATCCTTCGGATGAAGAAATTCGTGAGAATTGGGAAAAGGCTCAACATGCGTTTCATATCACAAAAAAA TCTGGAAAGGATTCTGGAGA
Downstream 100 bases:
>100_bases CTATGACCGTAGAGAACAATTGAAAGCCATTCACGCTGCAAGAAAGGCTCTCACCTATCAAAAAGTCGAAAAAGCCATTA AAAGGCTCATACGAGCCAAT
Product: transposition regulatory protein TnpB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 704; Mature: 703
Protein sequence:
>704_residues MSIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTIPNFKEQFSNYKQRAKNIRFE VKSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLTAFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQ QHILYGKITQKTPVVGFLRVIYSYLFQLTDTREEWEKDRWDVRILQEKYGIDYNKSDTIYYIDFTKIEQINIREQVKKYI KQRLLSKNNFTWGTARNYMFCLPPFIKFIFSLEPTWNDLKQLKRFHMEQYIQWLREYTKKHLKQKNANPERYISESLTTI QKFLGDIQRYEYDIAPETPVKLLIFPEDKPKQKKKSIDRIDYIPDYVLEQLFAHINDLCKDVQPVIWVAFKTGLRISDVL GLKQDCLVKLNGKYYIETDIEKTYVQGHRVPIDDELANILAVLIDKSIKNSNDDNNPEKYIFVRYHGSRKGKPYSQHWVK EKLNLLAKTKHITDENGHVFHFKTHQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKRKAFEEAIKQGL FSFDLNGEVREVKPDEDIPTDILETLWRDHKLNAIDNPYGTCHARINGKCPFAAEPPCLTCNGGSPCKDLAIGFSELDIQ KYELLIKTTTKTIEALEQRGRHDMVEKNKKNLERYEKILSTIKEGNIIFGRLERIKRKQGVSNG
Sequences:
>Translated_704_residues MSIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTIPNFKEQFSNYKQRAKNIRFE VKSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLTAFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQ QHILYGKITQKTPVVGFLRVIYSYLFQLTDTREEWEKDRWDVRILQEKYGIDYNKSDTIYYIDFTKIEQINIREQVKKYI KQRLLSKNNFTWGTARNYMFCLPPFIKFIFSLEPTWNDLKQLKRFHMEQYIQWLREYTKKHLKQKNANPERYISESLTTI QKFLGDIQRYEYDIAPETPVKLLIFPEDKPKQKKKSIDRIDYIPDYVLEQLFAHINDLCKDVQPVIWVAFKTGLRISDVL GLKQDCLVKLNGKYYIETDIEKTYVQGHRVPIDDELANILAVLIDKSIKNSNDDNNPEKYIFVRYHGSRKGKPYSQHWVK EKLNLLAKTKHITDENGHVFHFKTHQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKRKAFEEAIKQGL FSFDLNGEVREVKPDEDIPTDILETLWRDHKLNAIDNPYGTCHARINGKCPFAAEPPCLTCNGGSPCKDLAIGFSELDIQ KYELLIKTTTKTIEALEQRGRHDMVEKNKKNLERYEKILSTIKEGNIIFGRLERIKRKQGVSNG >Mature_703_residues SIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTIPNFKEQFSNYKQRAKNIRFEV KSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLTAFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQQ HILYGKITQKTPVVGFLRVIYSYLFQLTDTREEWEKDRWDVRILQEKYGIDYNKSDTIYYIDFTKIEQINIREQVKKYIK QRLLSKNNFTWGTARNYMFCLPPFIKFIFSLEPTWNDLKQLKRFHMEQYIQWLREYTKKHLKQKNANPERYISESLTTIQ KFLGDIQRYEYDIAPETPVKLLIFPEDKPKQKKKSIDRIDYIPDYVLEQLFAHINDLCKDVQPVIWVAFKTGLRISDVLG LKQDCLVKLNGKYYIETDIEKTYVQGHRVPIDDELANILAVLIDKSIKNSNDDNNPEKYIFVRYHGSRKGKPYSQHWVKE KLNLLAKTKHITDENGHVFHFKTHQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKRKAFEEAIKQGLF SFDLNGEVREVKPDEDIPTDILETLWRDHKLNAIDNPYGTCHARINGKCPFAAEPPCLTCNGGSPCKDLAIGFSELDIQK YELLIKTTTKTIEALEQRGRHDMVEKNKKNLERYEKILSTIKEGNIIFGRLERIKRKQGVSNG
Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'phage' integrase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011010 - InterPro: IPR013762 - InterPro: IPR002104 - InterPro: IPR023109 - InterPro: IPR004107 [H]
Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]
EC number: NA
Molecular weight: Translated: 83020; Mature: 82889
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTI CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCEEEEECCEEEEEEECC PNFKEQFSNYKQRAKNIRFEVKSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLT CCHHHHHHHHHHHHHCCEEEEECCCEEEEEEEEEEHHHHHCCHHHHHHHHCCHHHHHHHH AFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQQHILYGKITQKTPVVGFLRV HHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHH IYSYLFQLTDTREEWEKDRWDVRILQEKYGIDYNKSDTIYYIDFTKIEQINIREQVKKYI HHHHHHHHCCCHHHHHCCCCHHEEHHHHHCCCCCCCCEEEEEEECEEEECCHHHHHHHHH KQRLLSKNNFTWGTARNYMFCLPPFIKFIFSLEPTWNDLKQLKRFHMEQYIQWLREYTKK HHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HLKQKNANPERYISESLTTIQKFLGDIQRYEYDIAPETPVKLLIFPEDKPKQKKKSIDRI HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCEEEEEECCCCCHHHHHHHHHH DYIPDYVLEQLFAHINDLCKDVQPVIWVAFKTGLRISDVLGLKQDCLVKLNGKYYIETDI HCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCCHHHHHCCCCCCEEEECCEEEEEECC EKTYVQGHRVPIDDELANILAVLIDKSIKNSNDDNNPEKYIFVRYHGSRKGKPYSQHWVK HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHH EKLNLLAKTKHITDENGHVFHFKTHQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRY HHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH AKLLDNTKRKAFEEAIKQGLFSFDLNGEVREVKPDEDIPTDILETLWRDHKLNAIDNPYG HHHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCC TCHARINGKCPFAAEPPCLTCNGGSPCKDLAIGFSELDIQKYELLIKTTTKTIEALEQRG EEEEEECCCCCCCCCCCEEECCCCCCHHHHHCCHHHHCHHHHHEEEHHHHHHHHHHHHCC RHDMVEKNKKNLERYEKILSTIKEGNIIFGRLERIKRKQGVSNG CHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCC >Mature Secondary Structure SIQQHHIHDELGFHERLQQELSTYTEKIIHEDGSVTTNVVQNPYFLVNDTWNVNVIGTI CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCEEEEECCEEEEEEECC PNFKEQFSNYKQRAKNIRFEVKSPSVNLEIKYVWYNKLFRDEWTLTSAFVGQTSHLRKLT CCHHHHHHHHHHHHHCCEEEEECCCEEEEEEEEEEHHHHHCCHHHHHHHHCCHHHHHHHH AFLNEKYPSLHSLLDLEIEKAEREWMFWLSENGVQTQSTQQHILYGKITQKTPVVGFLRV HHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHH IYSYLFQLTDTREEWEKDRWDVRILQEKYGIDYNKSDTIYYIDFTKIEQINIREQVKKYI HHHHHHHHCCCHHHHHCCCCHHEEHHHHHCCCCCCCCEEEEEEECEEEECCHHHHHHHHH KQRLLSKNNFTWGTARNYMFCLPPFIKFIFSLEPTWNDLKQLKRFHMEQYIQWLREYTKK HHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HLKQKNANPERYISESLTTIQKFLGDIQRYEYDIAPETPVKLLIFPEDKPKQKKKSIDRI HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCEEEEEECCCCCHHHHHHHHHH DYIPDYVLEQLFAHINDLCKDVQPVIWVAFKTGLRISDVLGLKQDCLVKLNGKYYIETDI HCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCCHHHHHCCCCCCEEEECCEEEEEECC EKTYVQGHRVPIDDELANILAVLIDKSIKNSNDDNNPEKYIFVRYHGSRKGKPYSQHWVK HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHH EKLNLLAKTKHITDENGHVFHFKTHQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRY HHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH AKLLDNTKRKAFEEAIKQGLFSFDLNGEVREVKPDEDIPTDILETLWRDHKLNAIDNPYG HHHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCC TCHARINGKCPFAAEPPCLTCNGGSPCKDLAIGFSELDIQKYELLIKTTTKTIEALEQRG EEEEEECCCCCCCCCCCEEECCCCCCHHHHHCCHHHHCHHHHHEEEHHHHHHHHHHHHCC RHDMVEKNKKNLERYEKILSTIKEGNIIFGRLERIKRKQGVSNG CHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11418146 [H]