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The map label for this gene is xyn11A [H]

Identifier: 138897034

GI number: 138897034

Start: 3512972

End: 3513676

Strand: Reverse

Name: xyn11A [H]

Synonym: GTNG_3405

Alternate gene names: 138897034

Gene position: 3513676-3512972 (Counterclockwise)

Preceding gene: 138897036

Following gene: 138897031

Centisome position: 98.97

GC content: 35.04

Gene sequence:

>705_bases
ATGAAGAAAAAATTGAAGATGATAGGAATCAGTATCTTAATAGTCATTCTCGCTTTGTTTGGGATGTGGAAATTAATAAA
TTCGAGAACCTTTCAGTTGTTTGGAGGAATCACTGACAAGGTGGAGACTAGCCAAAAGGTAATTGCATTGACATTTGATG
ATGGACCAACAAAAAATGTAGATGATATTCTTGCTTTGTTGGATCGCTACAATGCAAAAGCTACTTTTTTTCTCATCGGG
AGTGACTTGGAAAAGAATCTAGATGAAGCGAAAAAGATAGTAGCTGCGGGGCATCAAATTGGAAATCATACGTATTCTCA
TCAAAGAATGGTTTTTCGATCTCCTTCTTTTATCAAGAATGAAATTGAAAAAACGGACAAACTTATTCGTAAGGCTGGAT
ATAGTGGTGAGATCGACTTTCGGCCTCCGTATGGAAAAAAACTAGTAGGTGTGCCTTATTACTTGTATACACATAATAGA
GATACCATTACTTGGGATATTGAACCAGATACTTACTATACCTCATCCAAAGACAAAATAAATTATGTAATCAAAAATGT
AAAGCCGGGCTCAATCATATTAATGCACCCAATGTACGATCAGTCTGGGGAAGAATTAAGAGCGATTGAAGGAATATTAC
AGTCCTTATCAAAAGAAGGATATAAATTCATTACGGTTAATGAACTTCAAGGATTGGAAAAATAA

Upstream 100 bases:

>100_bases
TCACTGTATATGATTTCCAAGGTGGTGGATTTTTTATGTGCATTTATGCATTCGTTATGCGTTTTGCAACACGTTCATGC
ATAAAAGGAAGGCTTTATGT

Downstream 100 bases:

>100_bases
TATGAAGCGAAACTTTCCAAAGAGGTGTGGTGGATTCTGCTTGAATGAATAACCATATTATTTCCTGATAAAAGGAATAT
ACTTCTGTTAAATTGGCAGA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase 11A; Xylanase xyn11A; Xylanase xynT; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MKKKLKMIGISILIVILALFGMWKLINSRTFQLFGGITDKVETSQKVIALTFDDGPTKNVDDILALLDRYNAKATFFLIG
SDLEKNLDEAKKIVAAGHQIGNHTYSHQRMVFRSPSFIKNEIEKTDKLIRKAGYSGEIDFRPPYGKKLVGVPYYLYTHNR
DTITWDIEPDTYYTSSKDKINYVIKNVKPGSIILMHPMYDQSGEELRAIEGILQSLSKEGYKFITVNELQGLEK

Sequences:

>Translated_234_residues
MKKKLKMIGISILIVILALFGMWKLINSRTFQLFGGITDKVETSQKVIALTFDDGPTKNVDDILALLDRYNAKATFFLIG
SDLEKNLDEAKKIVAAGHQIGNHTYSHQRMVFRSPSFIKNEIEKTDKLIRKAGYSGEIDFRPPYGKKLVGVPYYLYTHNR
DTITWDIEPDTYYTSSKDKINYVIKNVKPGSIILMHPMYDQSGEELRAIEGILQSLSKEGYKFITVNELQGLEK
>Mature_234_residues
MKKKLKMIGISILIVILALFGMWKLINSRTFQLFGGITDKVETSQKVIALTFDDGPTKNVDDILALLDRYNAKATFFLIG
SDLEKNLDEAKKIVAAGHQIGNHTYSHQRMVFRSPSFIKNEIEKTDKLIRKAGYSGEIDFRPPYGKKLVGVPYYLYTHNR
DTITWDIEPDTYYTSSKDKINYVIKNVKPGSIILMHPMYDQSGEELRAIEGILQSLSKEGYKFITVNELQGLEK

Specific function: Endo-acting xylanase which specifically cleaves internal linkages on the xylan backbone, releasing xylooligosaccharides. Is also probably able, via its C-terminal domain, to remove acetyl groups from acetylated xylan, and thus it is probably capable of hy

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509 [H]

Pfam domain/function: PF03422 CBM_6; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 26691; Mature: 26691

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLKMIGISILIVILALFGMWKLINSRTFQLFGGITDKVETSQKVIALTFDDGPTKNV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCH
DDILALLDRYNAKATFFLIGSDLEKNLDEAKKIVAAGHQIGNHTYSHQRMVFRSPSFIKN
HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
EIEKTDKLIRKAGYSGEIDFRPPYGKKLVGVPYYLYTHNRDTITWDIEPDTYYTSSKDKI
HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEECCCCEECCCCCCE
NYVIKNVKPGSIILMHPMYDQSGEELRAIEGILQSLSKEGYKFITVNELQGLEK
EEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCC
>Mature Secondary Structure
MKKKLKMIGISILIVILALFGMWKLINSRTFQLFGGITDKVETSQKVIALTFDDGPTKNV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCH
DDILALLDRYNAKATFFLIGSDLEKNLDEAKKIVAAGHQIGNHTYSHQRMVFRSPSFIKN
HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHH
EIEKTDKLIRKAGYSGEIDFRPPYGKKLVGVPYYLYTHNRDTITWDIEPDTYYTSSKDKI
HHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEECCCCEECCCCCCE
NYVIKNVKPGSIILMHPMYDQSGEELRAIEGILQSLSKEGYKFITVNELQGLEK
EEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA