Click here to switch to the map view.

The map label for this gene is yhcK [H]

Identifier: 138897030

GI number: 138897030

Start: 3509062

End: 3510300

Strand: Direct

Name: yhcK [H]

Synonym: GTNG_3401

Alternate gene names: 138897030

Gene position: 3509062-3510300 (Clockwise)

Preceding gene: 138897027

Following gene: 138897032

Centisome position: 98.84

GC content: 43.34

Gene sequence:

>1239_bases
ATGTTACTCCGAGCACGACCGATTATTTTTGCTGTTTTTTTCGTTTCAATCGCCGTTGCCTTTGTGTCAAAGCCGATTTC
CTTCGATCGTACGTATGTCATCGCCCTGCTATTTTACTGGCTGTTTTCTAGCTTATATTCTCACTTGCGCGTCGTCGACA
AAACGAAAAACAATATCCCGGTTGATTACGGCATTAACTACAGCTTATCGTTCGCCTTATTTGCCGGCCCGCTCGGACTG
TTTATTTTTGAAACATTATTTCGTCTCACTGAACATGTGACAAAAAAATATTTGAAAACAGCGGAGCCGGATGAATGGCT
GCATACATTGTACAATATCGGTTCTTTTGTAACATTCAATTCACTGGCGTTTGCCTTATATAATCTCCTTCATCCGTGGT
TTCAGTCTGTTCCGTTCATCGGCTTTTGGCTGCTTATGTTTCTACTCGTCATCATCGTTTCCTTTTTGACTGATTGCTGT
CTCATCGTAATCTTTTACATAACCGGCGACATTCGCACAAAGCGTGAAGCACTGGATTTTATTAAGACAAGAAGCTGGAT
GGATATAGGAAAAACCGTACTGACAAATGGCCTGTTATTTCTCTTTTTGCAAGAACAGCGCTGGGATATGCTCTTGAGTT
TGTTTTTGCTCAATTACTTCGTCAGCTGCTCATTCTTTTCCAAATCGCAAAGCATCCAGCATAAACTAGAACGCGATCAG
TTTGAAAGAATGGCATATACCGATTTTCTGACCGGTGTTCATAACCGAGCCTACATGGACCAGACGATTGCCAAGTTAAA
TGGAACAGGGGAATGGATTGGCGTTGTCGTTGCTGATATCGACAATTTTAAAGCGATTAATGACACGTACAATCACGCCG
TCGGCGATGAAGTCATTCGCCATTTTGCCTTGACATTGAAACAGTTTCTTAAAGAGGACGATTTTTTGTTCCGCAGCGGT
GGGGAAGAGTTTACTATGTTTTTGCGCCATCGCACATTTGAAGAAAGTGTTCAGCTTGTCGAAAAGATGCGGGAAACTGT
ACGCCACAGCACGGTGTTGGTCGATGACGGAACGGCCAAACGTCCAATTGCTTACACATCATCATTCGGTCTCTACTTTT
TCCAAACAGGAGGAACGACATCGCTCGAAAAGGCATACGTCTATGCGGATCACTTATTGCTCCGTTCGAAAGAAAGCGGC
AAAAATAAAATATCGGCCCAATGCGGGGGAGTTGCGTAG

Upstream 100 bases:

>100_bases
TTTTTGTTTAAGGCCACTGGCATATAGGTGGCCCTCCTTTTTTAGCATGGCTTCGCCAACGCCAAAGTCGTCAGAGGTCA
GATCATAGGAGAGGGCTGAG

Downstream 100 bases:

>100_bases
CGAAGCAACTCCCTTTTCGTTTTCTCCCGCCCAATGTTGTGAATGATGGGAAACAGACATCAACAACTACCTCGTCGCCA
TTGTCGAGAAGGTCAAGACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MLLRARPIIFAVFFVSIAVAFVSKPISFDRTYVIALLFYWLFSSLYSHLRVVDKTKNNIPVDYGINYSLSFALFAGPLGL
FIFETLFRLTEHVTKKYLKTAEPDEWLHTLYNIGSFVTFNSLAFALYNLLHPWFQSVPFIGFWLLMFLLVIIVSFLTDCC
LIVIFYITGDIRTKREALDFIKTRSWMDIGKTVLTNGLLFLFLQEQRWDMLLSLFLLNYFVSCSFFSKSQSIQHKLERDQ
FERMAYTDFLTGVHNRAYMDQTIAKLNGTGEWIGVVVADIDNFKAINDTYNHAVGDEVIRHFALTLKQFLKEDDFLFRSG
GEEFTMFLRHRTFEESVQLVEKMRETVRHSTVLVDDGTAKRPIAYTSSFGLYFFQTGGTTSLEKAYVYADHLLLRSKESG
KNKISAQCGGVA

Sequences:

>Translated_412_residues
MLLRARPIIFAVFFVSIAVAFVSKPISFDRTYVIALLFYWLFSSLYSHLRVVDKTKNNIPVDYGINYSLSFALFAGPLGL
FIFETLFRLTEHVTKKYLKTAEPDEWLHTLYNIGSFVTFNSLAFALYNLLHPWFQSVPFIGFWLLMFLLVIIVSFLTDCC
LIVIFYITGDIRTKREALDFIKTRSWMDIGKTVLTNGLLFLFLQEQRWDMLLSLFLLNYFVSCSFFSKSQSIQHKLERDQ
FERMAYTDFLTGVHNRAYMDQTIAKLNGTGEWIGVVVADIDNFKAINDTYNHAVGDEVIRHFALTLKQFLKEDDFLFRSG
GEEFTMFLRHRTFEESVQLVEKMRETVRHSTVLVDDGTAKRPIAYTSSFGLYFFQTGGTTSLEKAYVYADHLLLRSKESG
KNKISAQCGGVA
>Mature_412_residues
MLLRARPIIFAVFFVSIAVAFVSKPISFDRTYVIALLFYWLFSSLYSHLRVVDKTKNNIPVDYGINYSLSFALFAGPLGL
FIFETLFRLTEHVTKKYLKTAEPDEWLHTLYNIGSFVTFNSLAFALYNLLHPWFQSVPFIGFWLLMFLLVIIVSFLTDCC
LIVIFYITGDIRTKREALDFIKTRSWMDIGKTVLTNGLLFLFLQEQRWDMLLSLFLLNYFVSCSFFSKSQSIQHKLERDQ
FERMAYTDFLTGVHNRAYMDQTIAKLNGTGEWIGVVVADIDNFKAINDTYNHAVGDEVIRHFALTLKQFLKEDDFLFRSG
GEEFTMFLRHRTFEESVQLVEKMRETVRHSTVLVDDGTAKRPIAYTSSFGLYFFQTGGTTSLEKAYVYADHLLLRSKESG
KNKISAQCGGVA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=33.9393939393939, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=30.8641975308642, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI87082007, Length=201, Percent_Identity=27.8606965174129, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=30.2197802197802, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=28.4848484848485, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.7619047619048, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787802, Length=160, Percent_Identity=30.625, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=93, Percent_Identity=40.8602150537634, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=26.5822784810127, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 47603; Mature: 47603

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MLLRARPIIFAVFFVSIAVAFVSKPISFDRTYVIALLFYWLFSSLYSHLRVVDKTKNNIP
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VDYGINYSLSFALFAGPLGLFIFETLFRLTEHVTKKYLKTAEPDEWLHTLYNIGSFVTFN
EEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SLAFALYNLLHPWFQSVPFIGFWLLMFLLVIIVSFLTDCCLIVIFYITGDIRTKREALDF
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IKTRSWMDIGKTVLTNGLLFLFLQEQRWDMLLSLFLLNYFVSCSFFSKSQSIQHKLERDQ
HHHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FERMAYTDFLTGVHNRAYMDQTIAKLNGTGEWIGVVVADIDNFKAINDTYNHAVGDEVIR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
HFALTLKQFLKEDDFLFRSGGEEFTMFLRHRTFEESVQLVEKMRETVRHSTVLVDDGTAK
HHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCC
RPIAYTSSFGLYFFQTGGTTSLEKAYVYADHLLLRSKESGKNKISAQCGGVA
CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]