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The map label for this gene is yukF [H]

Identifier: 138897009

GI number: 138897009

Start: 3487017

End: 3488252

Strand: Direct

Name: yukF [H]

Synonym: GTNG_3380

Alternate gene names: 138897009

Gene position: 3487017-3488252 (Clockwise)

Preceding gene: 138897001

Following gene: 138897010

Centisome position: 98.22

GC content: 48.14

Gene sequence:

>1236_bases
ATGTCTCATTACAATGACCCGTTCCGCGGCGAGTTTGACAGCCTTGAAGAGTTTGCCGACCGCGTCAGCGACGTGCTGCG
ATGTCCGGTGACCATCGAAGACGCGAACCATCGGCTCATCGCCTACAGCGCCCATGATGATTACACCGACCCGGCACGGA
CGGCGACAATCATCAGCCGACGCGTTCCAGAAAAAGTGATTAACAGCTTATGGAAACAAGGTGCCATTCCAGCGTTGCTG
AAAAGCCGTGAACCGGTGCGCGTTCCACCAATTGAAGGTGTTGGCCTCGGCAGCCGCGTCGCCGTCTCCATTTGGAAAAA
CGATGAAGTGATCGGCTTTATCTGGGTGCTCGAAACGAACCGGACGCTCTCGCCTGAGGAGATGGAATGGCTGAAGCTGG
CGGCCAAAGCGGCGAAAAATAAAGTGTTGCAACTGTATATGCGCAAAAACAAAAAAGAAGAACGAGTGCAAGAGCTGTTT
TGGAAACTACTCACCAGTCATATCGCGACCGAAGATGAAATCCGTGCGCACCTTGCCGCGATGCAAATTACGGCAGCGCC
GCAGTTTGCTGTCGTCGTCTTCCGTTTTGCGGCCGATTTGACCACCGAAATGGAACGGCAAATTTCCTACTTATTACAAA
CAACTCAGCAACTCCCGCTCCTTCTCTATACAACCGACAGACGTAACGTCATTTTGCTAGCAGCGCCGAAAACAGATCAG
CCGCTAAAAGAGCTGAACGAATTCATCGAGTCGTTTTCCGCGAAAATGAAAGAGCGATTTCACATTCATGATGTGCAAAG
CGGATTCGGTGGCGTATACGAGTCATATCGTCTGATCGAAAAAAGCTACCGTGAAGCGCTCGCCGTACTAGCGCTGAAAG
AAAAATTCGGCAATGAAATAAAGACGGTTTACGGCTACGCCCAGCTCGGCATTTACCAGTTTTTTGACTTTTTGCTTGAG
AAAAAGCGGCAAGGGGAATGGGCCAACCCAGCTTTAGCCAAGCTGCACATATACGATAAAAAACATCATAGCGATTTAGT
GAAAACGTTCGAAACATTCTTTGATCATAATGAAAACGTGCAAGAAACCGCCGACGCCCTCAACATTCACCCGAACACGC
TTGCTTACCGGTTAAAAAGAATCGCTGACATTGCTGAGCTTGATCTCAATGATATGAATCAAAAAATCAAATTATATATC
GATATTAAATTAGCAAAATATGAAGCGCACAGTTAA

Upstream 100 bases:

>100_bases
AAAAGTGCACTCACTCCTCTTTCTTTGTAGAATGCATGAACAATCCTCATTTATGGTAAAATCAAACTAAAATCCTATGG
ACAATGCGAGGGAAACAAAT

Downstream 100 bases:

>100_bases
TTTGTGAAAATCCACAAAAACTGTGTGCTTCTTTTCTCTTTTTTGAACAATGTCCGACCTGCTCCTTTTCTTTTATACTA
TAGGTGCAGCCACTTCTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSHYNDPFRGEFDSLEEFADRVSDVLRCPVTIEDANHRLIAYSAHDDYTDPARTATIISRRVPEKVINSLWKQGAIPALL
KSREPVRVPPIEGVGLGSRVAVSIWKNDEVIGFIWVLETNRTLSPEEMEWLKLAAKAAKNKVLQLYMRKNKKEERVQELF
WKLLTSHIATEDEIRAHLAAMQITAAPQFAVVVFRFAADLTTEMERQISYLLQTTQQLPLLLYTTDRRNVILLAAPKTDQ
PLKELNEFIESFSAKMKERFHIHDVQSGFGGVYESYRLIEKSYREALAVLALKEKFGNEIKTVYGYAQLGIYQFFDFLLE
KKRQGEWANPALAKLHIYDKKHHSDLVKTFETFFDHNENVQETADALNIHPNTLAYRLKRIADIAELDLNDMNQKIKLYI
DIKLAKYEAHS

Sequences:

>Translated_411_residues
MSHYNDPFRGEFDSLEEFADRVSDVLRCPVTIEDANHRLIAYSAHDDYTDPARTATIISRRVPEKVINSLWKQGAIPALL
KSREPVRVPPIEGVGLGSRVAVSIWKNDEVIGFIWVLETNRTLSPEEMEWLKLAAKAAKNKVLQLYMRKNKKEERVQELF
WKLLTSHIATEDEIRAHLAAMQITAAPQFAVVVFRFAADLTTEMERQISYLLQTTQQLPLLLYTTDRRNVILLAAPKTDQ
PLKELNEFIESFSAKMKERFHIHDVQSGFGGVYESYRLIEKSYREALAVLALKEKFGNEIKTVYGYAQLGIYQFFDFLLE
KKRQGEWANPALAKLHIYDKKHHSDLVKTFETFFDHNENVQETADALNIHPNTLAYRLKRIADIAELDLNDMNQKIKLYI
DIKLAKYEAHS
>Mature_410_residues
SHYNDPFRGEFDSLEEFADRVSDVLRCPVTIEDANHRLIAYSAHDDYTDPARTATIISRRVPEKVINSLWKQGAIPALLK
SREPVRVPPIEGVGLGSRVAVSIWKNDEVIGFIWVLETNRTLSPEEMEWLKLAAKAAKNKVLQLYMRKNKKEERVQELFW
KLLTSHIATEDEIRAHLAAMQITAAPQFAVVVFRFAADLTTEMERQISYLLQTTQQLPLLLYTTDRRNVILLAAPKTDQP
LKELNEFIESFSAKMKERFHIHDVQSGFGGVYESYRLIEKSYREALAVLALKEKFGNEIKTVYGYAQLGIYQFFDFLLEK
KRQGEWANPALAKLHIYDKKHHSDLVKTFETFFDHNENVQETADALNIHPNTLAYRLKRIADIAELDLNDMNQKIKLYID
IKLAKYEAHS

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=205, Percent_Identity=29.7560975609756, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010312 [H]

Pfam domain/function: PF06018 CodY [H]

EC number: NA

Molecular weight: Translated: 47500; Mature: 47369

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHYNDPFRGEFDSLEEFADRVSDVLRCPVTIEDANHRLIAYSAHDDYTDPARTATIISR
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
RVPEKVINSLWKQGAIPALLKSREPVRVPPIEGVGLGSRVAVSIWKNDEVIGFIWVLETN
HCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECC
RTLSPEEMEWLKLAAKAAKNKVLQLYMRKNKKEERVQELFWKLLTSHIATEDEIRAHLAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
MQITAAPQFAVVVFRFAADLTTEMERQISYLLQTTQQLPLLLYTTDRRNVILLAAPKTDQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCC
PLKELNEFIESFSAKMKERFHIHDVQSGFGGVYESYRLIEKSYREALAVLALKEKFGNEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KTVYGYAQLGIYQFFDFLLEKKRQGEWANPALAKLHIYDKKHHSDLVKTFETFFDHNENV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCH
QETADALNIHPNTLAYRLKRIADIAELDLNDMNQKIKLYIDIKLAKYEAHS
HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEEEEECCCCCC
>Mature Secondary Structure 
SHYNDPFRGEFDSLEEFADRVSDVLRCPVTIEDANHRLIAYSAHDDYTDPARTATIISR
CCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
RVPEKVINSLWKQGAIPALLKSREPVRVPPIEGVGLGSRVAVSIWKNDEVIGFIWVLETN
HCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECC
RTLSPEEMEWLKLAAKAAKNKVLQLYMRKNKKEERVQELFWKLLTSHIATEDEIRAHLAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
MQITAAPQFAVVVFRFAADLTTEMERQISYLLQTTQQLPLLLYTTDRRNVILLAAPKTDQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCC
PLKELNEFIESFSAKMKERFHIHDVQSGFGGVYESYRLIEKSYREALAVLALKEKFGNEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KTVYGYAQLGIYQFFDFLLEKKRQGEWANPALAKLHIYDKKHHSDLVKTFETFFDHNENV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCH
QETADALNIHPNTLAYRLKRIADIAELDLNDMNQKIKLYIDIKLAKYEAHS
HHHHHHHCCCCHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377 [H]