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The map label for this gene is ybbD [H]

Identifier: 138896874

GI number: 138896874

Start: 3352608

End: 3353990

Strand: Direct

Name: ybbD [H]

Synonym: GTNG_3239

Alternate gene names: 138896874

Gene position: 3352608-3353990 (Clockwise)

Preceding gene: 138896872

Following gene: 138896878

Centisome position: 94.43

GC content: 47.65

Gene sequence:

>1383_bases
ATGAAGCATTCTCGAAGTTCTAGAAGAAAGGCAAAAAAACGAATCTCATGGGCGTCAATTCTCGTAGTTTCTCTACTGTC
TGTCGCCTTATGCTTGTCTACTTATGCTTTAGTTAGCCGAGAACAATCCGATTCAAAGACCGTTCCCCCGAGCAGCAGCT
CTGAAAAACGAAACAGCGGGAACAGCCAACAGCCGCAAGCGAACGAACCGACAGAACAAAACGACCAACAATCACAAACC
AATGAAAACAACGGAAACGATGAACCCCAACAAACAAGCATCACCTTTTTTGAACCTTCGTCTGATCGAAACAAAAAAAT
TGAACGTCTGATGAAAACGATGAGCCTTCGAGAAAAAATCGGTCAACTGGTCATTGTCGGATTTCCATCGACCGAGCCCG
ATGAAAACGTAAAACAAATGATTCGCCAATATCATGTGGGCGGGGCCATTTTATACGACCGCAATATGAAAACACCGGAA
CAAGTCGCCACCTTGACGAATGATTTGCAGCGGGGCGCCTTGGAAAGCCGATTCAAAATCCCGCTCGTCTTTAGCATTGA
CCAGGAAGGGGGAAAGATTGTCCGAATGCGGCAATACGTTTCCCCGATTCCTTCCCAACAACAGCTAGGGCAAAGCAAAG
ACGATGCCAAAGTGTATCAAATCGCCCACCGAACGGGAACAGAACTGGCCGCGATGGGGATTCAAATCAACTTTGCACCA
GTGTTGGATTTATCGGCGACTGACAGCCGTTCGTTTGGGGAAGACCCTGTGTTGACAGGACGGTTGGGGCAACAAGTAGT
GACGGGGCTGACCGATGCGGGTGTGACGGCTGTCTTGAAACACTTTCCGGGAAACGGGCGCAGTCAAGTCGATCCGCACC
ATGACAGCTCTTCCGTTGAGGCCGGGATGGAAGATCTTGAAAACAAAGACATTCTTCCATTTCGACAAATCATCACAAAC
ATCAACCATGACCGTTTCTTTGTGATGGTCACACACATTAAATACCCGGTATACGACAAAGAACATCCCGCCAGCCTTTC
CTCTGCGATTATTCAACAATTGCTGCGGGAGAAATTGGGCTATGAAGGCATTGTCGTGACAGACGATTTGGAGATGGGAG
CAGTAAGCAAGTATTTCACCTATCGGGAACTTGGTTATCGCGCCATAGCGGCTGGCGCTGACTTATTGTTGGTTTGCCAC
ACGTTTGACCACCAAAAAGAAGTGATCGACGGCATCTGGGACGCCGTCCAAACCGGAAAACTGTCAGAAGAACGAATCAA
CGAATCCGTGAGAAAAATTTTAGCCTATAAACTGTCCCAGTTTCCTTCCATCGAAAACGTTTATGTCGATCCCACAAAAG
CGAAGCAAGTGGTAGGAAACTAA

Upstream 100 bases:

>100_bases
TGGCAACGGAGATGGGACGGATACTGGCATGTCATGAAGGAAAATGGACGTTTGGTGCTTGATGAAGCGAATATTCAAAA
ATTAGACTGGGTGAAAAGCA

Downstream 100 bases:

>100_bases
TCGATCCCCTTTCGATGCATCGTGAAACACTGGAATCATCCCCCACCTGCGCAACCGCGAAGAGGTGGGGGAGATTGTTT
GGAATGCCTTCCCTACGGCG

Product: putative anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKHSRSSRRKAKKRISWASILVVSLLSVALCLSTYALVSREQSDSKTVPPSSSSEKRNSGNSQQPQANEPTEQNDQQSQT
NENNGNDEPQQTSITFFEPSSDRNKKIERLMKTMSLREKIGQLVIVGFPSTEPDENVKQMIRQYHVGGAILYDRNMKTPE
QVATLTNDLQRGALESRFKIPLVFSIDQEGGKIVRMRQYVSPIPSQQQLGQSKDDAKVYQIAHRTGTELAAMGIQINFAP
VLDLSATDSRSFGEDPVLTGRLGQQVVTGLTDAGVTAVLKHFPGNGRSQVDPHHDSSSVEAGMEDLENKDILPFRQIITN
INHDRFFVMVTHIKYPVYDKEHPASLSSAIIQQLLREKLGYEGIVVTDDLEMGAVSKYFTYRELGYRAIAAGADLLLVCH
TFDHQKEVIDGIWDAVQTGKLSEERINESVRKILAYKLSQFPSIENVYVDPTKAKQVVGN

Sequences:

>Translated_460_residues
MKHSRSSRRKAKKRISWASILVVSLLSVALCLSTYALVSREQSDSKTVPPSSSSEKRNSGNSQQPQANEPTEQNDQQSQT
NENNGNDEPQQTSITFFEPSSDRNKKIERLMKTMSLREKIGQLVIVGFPSTEPDENVKQMIRQYHVGGAILYDRNMKTPE
QVATLTNDLQRGALESRFKIPLVFSIDQEGGKIVRMRQYVSPIPSQQQLGQSKDDAKVYQIAHRTGTELAAMGIQINFAP
VLDLSATDSRSFGEDPVLTGRLGQQVVTGLTDAGVTAVLKHFPGNGRSQVDPHHDSSSVEAGMEDLENKDILPFRQIITN
INHDRFFVMVTHIKYPVYDKEHPASLSSAIIQQLLREKLGYEGIVVTDDLEMGAVSKYFTYRELGYRAIAAGADLLLVCH
TFDHQKEVIDGIWDAVQTGKLSEERINESVRKILAYKLSQFPSIENVYVDPTKAKQVVGN
>Mature_460_residues
MKHSRSSRRKAKKRISWASILVVSLLSVALCLSTYALVSREQSDSKTVPPSSSSEKRNSGNSQQPQANEPTEQNDQQSQT
NENNGNDEPQQTSITFFEPSSDRNKKIERLMKTMSLREKIGQLVIVGFPSTEPDENVKQMIRQYHVGGAILYDRNMKTPE
QVATLTNDLQRGALESRFKIPLVFSIDQEGGKIVRMRQYVSPIPSQQQLGQSKDDAKVYQIAHRTGTELAAMGIQINFAP
VLDLSATDSRSFGEDPVLTGRLGQQVVTGLTDAGVTAVLKHFPGNGRSQVDPHHDSSSVEAGMEDLENKDILPFRQIITN
INHDRFFVMVTHIKYPVYDKEHPASLSSAIIQQLLREKLGYEGIVVTDDLEMGAVSKYFTYRELGYRAIAAGADLLLVCH
TFDHQKEVIDGIWDAVQTGKLSEERINESVRKILAYKLSQFPSIENVYVDPTKAKQVVGN

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=335, Percent_Identity=28.6567164179104, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788453, Length=349, Percent_Identity=24.3553008595989, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 51364; Mature: 51364

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHSRSSRRKAKKRISWASILVVSLLSVALCLSTYALVSREQSDSKTVPPSSSSEKRNSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCC
NSQQPQANEPTEQNDQQSQTNENNGNDEPQQTSITFFEPSSDRNKKIERLMKTMSLREKI
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
GQLVIVGFPSTEPDENVKQMIRQYHVGGAILYDRNMKTPEQVATLTNDLQRGALESRFKI
CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
PLVFSIDQEGGKIVRMRQYVSPIPSQQQLGQSKDDAKVYQIAHRTGTELAAMGIQINFAP
EEEEEECCCCCCEEHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCEEHEEEEEEEEE
VLDLSATDSRSFGEDPVLTGRLGQQVVTGLTDAGVTAVLKHFPGNGRSQVDPHHDSSSVE
EEECCCCCCCCCCCCCCEECHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
AGMEDLENKDILPFRQIITNINHDRFFVMVTHIKYPVYDKEHPASLSSAIIQQLLREKLG
HHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
YEGIVVTDDLEMGAVSKYFTYRELGYRAIAAGADLLLVCHTFDHQKEVIDGIWDAVQTGK
CCCEEEECCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCC
LSEERINESVRKILAYKLSQFPSIENVYVDPTKAKQVVGN
CCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCC
>Mature Secondary Structure
MKHSRSSRRKAKKRISWASILVVSLLSVALCLSTYALVSREQSDSKTVPPSSSSEKRNSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCC
NSQQPQANEPTEQNDQQSQTNENNGNDEPQQTSITFFEPSSDRNKKIERLMKTMSLREKI
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
GQLVIVGFPSTEPDENVKQMIRQYHVGGAILYDRNMKTPEQVATLTNDLQRGALESRFKI
CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
PLVFSIDQEGGKIVRMRQYVSPIPSQQQLGQSKDDAKVYQIAHRTGTELAAMGIQINFAP
EEEEEECCCCCCEEHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCEEHEEEEEEEEE
VLDLSATDSRSFGEDPVLTGRLGQQVVTGLTDAGVTAVLKHFPGNGRSQVDPHHDSSSVE
EEECCCCCCCCCCCCCCEECHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
AGMEDLENKDILPFRQIITNINHDRFFVMVTHIKYPVYDKEHPASLSSAIIQQLLREKLG
HHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
YEGIVVTDDLEMGAVSKYFTYRELGYRAIAAGADLLLVCHTFDHQKEVIDGIWDAVQTGK
CCCEEEECCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCC
LSEERINESVRKILAYKLSQFPSIENVYVDPTKAKQVVGN
CCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]