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The map label for this gene is rbsC [H]

Identifier: 138896808

GI number: 138896808

Start: 3273275

End: 3274219

Strand: Reverse

Name: rbsC [H]

Synonym: GTNG_3171

Alternate gene names: 138896808

Gene position: 3274219-3273275 (Counterclockwise)

Preceding gene: 138896809

Following gene: 138896807

Centisome position: 92.22

GC content: 43.7

Gene sequence:

>945_bases
ATGATGGAAGCGAAGCGAAAGTGGGATGTAAAAAAGCTTGGGCCCCTTATTGGTTTAGCATTATTATGCATCGTATTGTC
CATACTAAGTGAAGATTTTTTAACGATGAATAATTGGCTGAACCTGTTGCGCCAAGTGTCGATTAATGCATTGATCGCTT
TTGGTATGACCTTTGTCATTTTAACAGGCGGCATCGATTTATCAGTCGGTTCTGTGTTAGCGTTGTCAAGCGCTATTACG
GCAGGTTTAATGGCTCAAGGTGTCGATGGGTTTTTGGCCATTTTAATCGGCTTATTATCAGGTACGGTAATGGGGGTGCT
AAATGGAATCATCATTACGAAAGGGAGGGTTGCACCGTTTATTGCGACATTAGCAACGATGACCGCTTTTCGCGGGTTAA
CACTCGTCTATACGGATGGTCGTCCGATTACAGGATTTGCGTCCGATGATATCATGTTTCAGATGATGGGACGTGGTTAT
TTCTTTGGTGTTCCTGTACCGATTGTATTGATGCTTGTTGTTTATATCGTTTTGTATGTCGTATTGAAAAAGACGACATT
TGGCCGTCATACGTATGCGATTGGTGGGAATGAGGAAGCGAGTCGGTTATCGGGTTTGCGTGTCGATCGGCTCAAAATCT
ACGTGTATGCGTTAACTGGAACGTTATCAGCTTTAGCTGGTCTCATTTTAACATCCCGTCTGAATTCGGCACAGCCGACA
GCGGGGACAGCGTATGAATTGGATGCAATTGCCGCTGTTGTCTTAGGAGGTACAAGTTTATCTGGGGGAAAAGGATGGAT
TTTCGGTACACTAGTCGGCGCACTCATTATTGGTGTGTTAAATAATGGATTAAATTTGTTGAACGTGTCATCGTTCTATC
AACAAGTGATAAAAGGGGCGGTCATTCTTCTTGCGGTGTTGTTAGATCGCCGCAAAGAAGCTTGA

Upstream 100 bases:

>100_bases
ATCGTGTCATGGTGATCCACGAAGGAAGAGTTCAAGCCATCTTAGAGAACAATGAGTTGGATCAGGAAACCGTCATGCGT
GCAGCGACAGGGGGGAATTG

Downstream 100 bases:

>100_bases
TCTATAAACCAAATGAAGGGGGAAGTCAAAATGAAAAAGGCATTTCGTTTGTTTACCGCTGTGTTATTTGCAGGAGCCGT
ATTGGCTGGATGTTCACTGG

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MMEAKRKWDVKKLGPLIGLALLCIVLSILSEDFLTMNNWLNLLRQVSINALIAFGMTFVILTGGIDLSVGSVLALSSAIT
AGLMAQGVDGFLAILIGLLSGTVMGVLNGIIITKGRVAPFIATLATMTAFRGLTLVYTDGRPITGFASDDIMFQMMGRGY
FFGVPVPIVLMLVVYIVLYVVLKKTTFGRHTYAIGGNEEASRLSGLRVDRLKIYVYALTGTLSALAGLILTSRLNSAQPT
AGTAYELDAIAAVVLGGTSLSGGKGWIFGTLVGALIIGVLNNGLNLLNVSSFYQQVIKGAVILLAVLLDRRKEA

Sequences:

>Translated_314_residues
MMEAKRKWDVKKLGPLIGLALLCIVLSILSEDFLTMNNWLNLLRQVSINALIAFGMTFVILTGGIDLSVGSVLALSSAIT
AGLMAQGVDGFLAILIGLLSGTVMGVLNGIIITKGRVAPFIATLATMTAFRGLTLVYTDGRPITGFASDDIMFQMMGRGY
FFGVPVPIVLMLVVYIVLYVVLKKTTFGRHTYAIGGNEEASRLSGLRVDRLKIYVYALTGTLSALAGLILTSRLNSAQPT
AGTAYELDAIAAVVLGGTSLSGGKGWIFGTLVGALIIGVLNNGLNLLNVSSFYQQVIKGAVILLAVLLDRRKEA
>Mature_314_residues
MMEAKRKWDVKKLGPLIGLALLCIVLSILSEDFLTMNNWLNLLRQVSINALIAFGMTFVILTGGIDLSVGSVLALSSAIT
AGLMAQGVDGFLAILIGLLSGTVMGVLNGIIITKGRVAPFIATLATMTAFRGLTLVYTDGRPITGFASDDIMFQMMGRGY
FFGVPVPIVLMLVVYIVLYVVLKKTTFGRHTYAIGGNEEASRLSGLRVDRLKIYVYALTGTLSALAGLILTSRLNSAQPT
AGTAYELDAIAAVVLGGTSLSGGKGWIFGTLVGALIIGVLNNGLNLLNVSSFYQQVIKGAVILLAVLLDRRKEA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=53.3980582524272, Blast_Score=301, Evalue=4e-83,
Organism=Escherichia coli, GI1790524, Length=305, Percent_Identity=42.2950819672131, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI145693152, Length=308, Percent_Identity=41.8831168831169, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1788896, Length=301, Percent_Identity=39.202657807309, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789992, Length=126, Percent_Identity=53.968253968254, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788471, Length=290, Percent_Identity=37.5862068965517, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87082395, Length=276, Percent_Identity=35.5072463768116, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693214, Length=246, Percent_Identity=36.9918699186992, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787794, Length=280, Percent_Identity=32.8571428571429, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787793, Length=283, Percent_Identity=31.4487632508834, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33280; Mature: 33280

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEAKRKWDVKKLGPLIGLALLCIVLSILSEDFLTMNNWLNLLRQVSINALIAFGMTFVI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGGIDLSVGSVLALSSAITAGLMAQGVDGFLAILIGLLSGTVMGVLNGIIITKGRVAPF
HCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHH
IATLATMTAFRGLTLVYTDGRPITGFASDDIMFQMMGRGYFFGVPVPIVLMLVVYIVLYV
HHHHHHHHHHCCEEEEEECCCCEECCCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH
VLKKTTFGRHTYAIGGNEEASRLSGLRVDRLKIYVYALTGTLSALAGLILTSRLNSAQPT
HHHHCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCC
AGTAYELDAIAAVVLGGTSLSGGKGWIFGTLVGALIIGVLNNGLNLLNVSSFYQQVIKGA
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
VILLAVLLDRRKEA
HHHHHHHHHHHCCC
>Mature Secondary Structure
MMEAKRKWDVKKLGPLIGLALLCIVLSILSEDFLTMNNWLNLLRQVSINALIAFGMTFVI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGGIDLSVGSVLALSSAITAGLMAQGVDGFLAILIGLLSGTVMGVLNGIIITKGRVAPF
HCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHH
IATLATMTAFRGLTLVYTDGRPITGFASDDIMFQMMGRGYFFGVPVPIVLMLVVYIVLYV
HHHHHHHHHHCCEEEEEECCCCEECCCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH
VLKKTTFGRHTYAIGGNEEASRLSGLRVDRLKIYVYALTGTLSALAGLILTSRLNSAQPT
HHHHCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCC
AGTAYELDAIAAVVLGGTSLSGGKGWIFGTLVGALIIGVLNNGLNLLNVSSFYQQVIKGA
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
VILLAVLLDRRKEA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]