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The map label for this gene is rbsB [H]

Identifier: 138896807

GI number: 138896807

Start: 3272312

End: 3273262

Strand: Reverse

Name: rbsB [H]

Synonym: GTNG_3170

Alternate gene names: 138896807

Gene position: 3273262-3272312 (Counterclockwise)

Preceding gene: 138896808

Following gene: 138896802

Centisome position: 92.2

GC content: 44.16

Gene sequence:

>951_bases
ATGAAGGGGGAAGTCAAAATGAAAAAGGCATTTCGTTTGTTTACCGCTGTGTTATTTGCAGGAGCCGTATTGGCTGGATG
TTCACTGGATCAAAACAATGCCGCGGACAACAAAGAGAAAACGCAAGAAGATGGAGAAGTAAAGATCGGTTTATCGATTT
CAACGCTCAATAATCCATTCTTTGTCACATTAAAAGAGGGAGCTGAAAAAGCTGCAAAAGACGAAGAGGCTGAGCTAATT
GTCGTCGATGCCCAAAATGACTCGGCGAAACAAATTAACGACATTGAGGACTTAATCCAACAAAATGTCGACATACTGCT
TGTAAACCCAACAGATTCCAGTGCAGTAGTTTCAGCCATTGAGTCAGCTAATAACGCCAACATTCCAGTGATTACAGTGG
ATCGCAGTGCAAGTGGTGGGGAAGTAGTTGCTCACATTGCTTCAGACAACGTGGCTGGCGGAGAAATGGCGGCACAGTTT
CTTGTTGAACACTTGAAAAATGGAGGGAATGTTGTAGAACTAGAAGGGATTCCTGGTTCGTCCGCAGCCCGTGAACGCGG
AGAAGGATTCCACAAAGTGATTGACAAAGCAACTAATATAAAAGTAGTGGCAAAACAAGCAGCCGATTTTGACCGGGCTA
AAGGCTTGTCGGTTATGGAAAACATTTTGCAAAGCCATAAAGACATTCAAGCGGTTTTTGCGCATAATGATGAAATGGCC
TTAGGAGCTTTAGAGGCGTTGCAAGCGCGCGGAATGGACGATGTTCTTGTAGTCGGATTCGATGCTACTGATGATGCGGT
CAAAGCGGTAAAAGAAGGCAAAATGGCGGCGACCATCGCCCAAAAACCAGCATTAATTGGTGAAAAGGCGGTAAAAGTAG
CAATCAGTGTTCACAAAGAAGAGAAAGTGGACGAATTTATCCCGATTTCGCTGGAGTTGGTTCAAAAATAA

Upstream 100 bases:

>100_bases
GTTGAACGTGTCATCGTTCTATCAACAAGTGATAAAAGGGGCGGTCATTCTTCTTGCGGTGTTGTTAGATCGCCGCAAAG
AAGCTTGATCTATAAACCAA

Downstream 100 bases:

>100_bases
TAACGGTTGGAAACATAAAGAGGGTGTCTCCAAAGCAACGAGACACCCTCTTCATTTTGCATATACGTGCCGGACGAATC
ACTATATCTGTTGTTTCACC

Product: ribose ABC transporter ribose-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKGEVKMKKAFRLFTAVLFAGAVLAGCSLDQNNAADNKEKTQEDGEVKIGLSISTLNNPFFVTLKEGAEKAAKDEEAELI
VVDAQNDSAKQINDIEDLIQQNVDILLVNPTDSSAVVSAIESANNANIPVITVDRSASGGEVVAHIASDNVAGGEMAAQF
LVEHLKNGGNVVELEGIPGSSAARERGEGFHKVIDKATNIKVVAKQAADFDRAKGLSVMENILQSHKDIQAVFAHNDEMA
LGALEALQARGMDDVLVVGFDATDDAVKAVKEGKMAATIAQKPALIGEKAVKVAISVHKEEKVDEFIPISLELVQK

Sequences:

>Translated_316_residues
MKGEVKMKKAFRLFTAVLFAGAVLAGCSLDQNNAADNKEKTQEDGEVKIGLSISTLNNPFFVTLKEGAEKAAKDEEAELI
VVDAQNDSAKQINDIEDLIQQNVDILLVNPTDSSAVVSAIESANNANIPVITVDRSASGGEVVAHIASDNVAGGEMAAQF
LVEHLKNGGNVVELEGIPGSSAARERGEGFHKVIDKATNIKVVAKQAADFDRAKGLSVMENILQSHKDIQAVFAHNDEMA
LGALEALQARGMDDVLVVGFDATDDAVKAVKEGKMAATIAQKPALIGEKAVKVAISVHKEEKVDEFIPISLELVQK
>Mature_316_residues
MKGEVKMKKAFRLFTAVLFAGAVLAGCSLDQNNAADNKEKTQEDGEVKIGLSISTLNNPFFVTLKEGAEKAAKDEEAELI
VVDAQNDSAKQINDIEDLIQQNVDILLVNPTDSSAVVSAIESANNANIPVITVDRSASGGEVVAHIASDNVAGGEMAAQF
LVEHLKNGGNVVELEGIPGSSAARERGEGFHKVIDKATNIKVVAKQAADFDRAKGLSVMENILQSHKDIQAVFAHNDEMA
LGALEALQARGMDDVLVVGFDATDDAVKAVKEGKMAATIAQKPALIGEKAVKVAISVHKEEKVDEFIPISLELVQK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=268, Percent_Identity=56.7164179104478, Blast_Score=294, Evalue=5e-81,
Organism=Escherichia coli, GI1790526, Length=268, Percent_Identity=35.0746268656716, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1790674, Length=248, Percent_Identity=31.4516129032258, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790194, Length=275, Percent_Identity=26.9090909090909, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789990, Length=267, Percent_Identity=29.2134831460674, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788473, Length=253, Percent_Identity=28.0632411067194, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787948, Length=227, Percent_Identity=27.7533039647577, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786540, Length=228, Percent_Identity=26.7543859649123, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33508; Mature: 33508

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGEVKMKKAFRLFTAVLFAGAVLAGCSLDQNNAADNKEKTQEDGEVKIGLSISTLNNPF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCE
FVTLKEGAEKAAKDEEAELIVVDAQNDSAKQINDIEDLIQQNVDILLVNPTDSSAVVSAI
EEEECCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
ESANNANIPVITVDRSASGGEVVAHIASDNVAGGEMAAQFLVEHLKNGGNVVELEGIPGS
HCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
SAARERGEGFHKVIDKATNIKVVAKQAADFDRAKGLSVMENILQSHKDIQAVFAHNDEMA
HHHHHHCCHHHHHHCCCCCEEEEEHHHCCHHHHCCHHHHHHHHHHHHHHEEHEECCCCHH
LGALEALQARGMDDVLVVGFDATDDAVKAVKEGKMAATIAQKPALIGEKAVKVAISVHKE
HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHCCCHHCCHHEEEEEEECCH
EKVDEFIPISLELVQK
HHHHHHCCCHHEEECC
>Mature Secondary Structure
MKGEVKMKKAFRLFTAVLFAGAVLAGCSLDQNNAADNKEKTQEDGEVKIGLSISTLNNPF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCE
FVTLKEGAEKAAKDEEAELIVVDAQNDSAKQINDIEDLIQQNVDILLVNPTDSSAVVSAI
EEEECCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
ESANNANIPVITVDRSASGGEVVAHIASDNVAGGEMAAQFLVEHLKNGGNVVELEGIPGS
HCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
SAARERGEGFHKVIDKATNIKVVAKQAADFDRAKGLSVMENILQSHKDIQAVFAHNDEMA
HHHHHHCCHHHHHHCCCCCEEEEEHHHCCHHHHCCHHHHHHHHHHHHHHEEHEECCCCHH
LGALEALQARGMDDVLVVGFDATDDAVKAVKEGKMAATIAQKPALIGEKAVKVAISVHKE
HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHCCCHHCCHHEEEEEEECCH
EKVDEFIPISLELVQK
HHHHHHCCCHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]