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The map label for this gene is yhcS [H]

Identifier: 138896749

GI number: 138896749

Start: 3212019

End: 3212690

Strand: Reverse

Name: yhcS [H]

Synonym: GTNG_3112

Alternate gene names: 138896749

Gene position: 3212690-3212019 (Counterclockwise)

Preceding gene: 138896750

Following gene: 138896747

Centisome position: 90.49

GC content: 56.55

Gene sequence:

>672_bases
ATGGGGCATAAGCAACATGCGATCCATCTTCCTTGGCGACGTCGGGTGATTTGCTATGCGGCGTTCATGCTCATGGTCAT
CGGAATGGCGATAGCCGGCTGGAACGGGTATTGGTACATTGTTGGCTGGAAAGCGGCAAAGCAAGACAATGCCCATTCCC
CTACACGGCATGCATCTGAGTTAGAAGCAAAAACGCGCTCGCAGGCTGCCTATTCACCCGAGAGTCAAAAAATCTCTCCT
TCTCGGCCACTTGGCGCCTATCTCGGTGAATTGTCCATTCCGAAGCTCGGGGTGGCGATTCCAGTGTATGAAGGGGTCCG
TGAACAAGAATTGCGCCGTGGCGTCGGCCATTATCCGGCAAGCGCTTGGCCGGGTGGCAACGGGCATGTCGTGTTGTCCG
GCCACCGCGACACCGTATTCCGCCGCTTTGGAGAAATCGACATCGGCGATGCGCTCATCATCCGGACAGATGAGTCGATC
GTTCATTATCGTGTCGTCAACATCCGCATTGTTGATGACGACGACCGAACCGTTTTGGTCGACAAGGCGCGGCCAACGCT
GACCGTGACAACATGCTACCCGTTTCGTCTGATCGGTCCCGCCCCGAAACGATACATCGTCACAGCCCGCCCTGTTCGGA
CTGACACCGCCGCTCACATGACTTTGCCGTGA

Upstream 100 bases:

>100_bases
CGCTTCTCCATACTTGATGCACGCTCTCGCCGGTCTGTTGCTTATGTTTGCTGGGTTCTTTCTTTATCGACGGGTTGGAC
GGCTCAAAGGATGAGGCGCG

Downstream 100 bases:

>100_bases
CATGCCAATATGTCACATCGTTTCGGGAGAACCCCCTCGTCGATCGAAGCACAGTGAGGAAGTTGATGAACATAAAAAGA
GGTGTCTCAAAGTCATGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MGHKQHAIHLPWRRRVICYAAFMLMVIGMAIAGWNGYWYIVGWKAAKQDNAHSPTRHASELEAKTRSQAAYSPESQKISP
SRPLGAYLGELSIPKLGVAIPVYEGVREQELRRGVGHYPASAWPGGNGHVVLSGHRDTVFRRFGEIDIGDALIIRTDESI
VHYRVVNIRIVDDDDRTVLVDKARPTLTVTTCYPFRLIGPAPKRYIVTARPVRTDTAAHMTLP

Sequences:

>Translated_223_residues
MGHKQHAIHLPWRRRVICYAAFMLMVIGMAIAGWNGYWYIVGWKAAKQDNAHSPTRHASELEAKTRSQAAYSPESQKISP
SRPLGAYLGELSIPKLGVAIPVYEGVREQELRRGVGHYPASAWPGGNGHVVLSGHRDTVFRRFGEIDIGDALIIRTDESI
VHYRVVNIRIVDDDDRTVLVDKARPTLTVTTCYPFRLIGPAPKRYIVTARPVRTDTAAHMTLP
>Mature_222_residues
GHKQHAIHLPWRRRVICYAAFMLMVIGMAIAGWNGYWYIVGWKAAKQDNAHSPTRHASELEAKTRSQAAYSPESQKISPS
RPLGAYLGELSIPKLGVAIPVYEGVREQELRRGVGHYPASAWPGGNGHVVLSGHRDTVFRRFGEIDIGDALIIRTDESIV
HYRVVNIRIVDDDDRTVLVDKARPTLTVTTCYPFRLIGPAPKRYIVTARPVRTDTAAHMTLP

Specific function: Unknown

COG id: COG3764

COG function: function code M; Sortase (surface protein transpeptidase)

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005754 [H]

Pfam domain/function: PF04203 Sortase [H]

EC number: NA

Molecular weight: Translated: 24945; Mature: 24814

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHKQHAIHLPWRRRVICYAAFMLMVIGMAIAGWNGYWYIVGWKAAKQDNAHSPTRHASE
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHH
LEAKTRSQAAYSPESQKISPSRPLGAYLGELSIPKLGVAIPVYEGVREQELRRGVGHYPA
HHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEHHCCCHHHHHHCCCCCCCC
SAWPGGNGHVVLSGHRDTVFRRFGEIDIGDALIIRTDESIVHYRVVNIRIVDDDDRTVLV
CCCCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCEEEE
DKARPTLTVTTCYPFRLIGPAPKRYIVTARPVRTDTAAHMTLP
ECCCCEEEEEEECCEEEECCCCCEEEEEECCCCCCCCEEEECC
>Mature Secondary Structure 
GHKQHAIHLPWRRRVICYAAFMLMVIGMAIAGWNGYWYIVGWKAAKQDNAHSPTRHASE
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHH
LEAKTRSQAAYSPESQKISPSRPLGAYLGELSIPKLGVAIPVYEGVREQELRRGVGHYPA
HHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEHHCCCHHHHHHCCCCCCCC
SAWPGGNGHVVLSGHRDTVFRRFGEIDIGDALIIRTDESIVHYRVVNIRIVDDDDRTVLV
CCCCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCEEEE
DKARPTLTVTTCYPFRLIGPAPKRYIVTARPVRTDTAAHMTLP
ECCCCEEEEEEECCEEEECCCCCEEEEEECCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]