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The map label for this gene is csrA [H]

Identifier: 138896695

GI number: 138896695

Start: 3155422

End: 3155670

Strand: Reverse

Name: csrA [H]

Synonym: GTNG_3058

Alternate gene names: 138896695

Gene position: 3155670-3155422 (Counterclockwise)

Preceding gene: 138896696

Following gene: 138896694

Centisome position: 88.88

GC content: 48.59

Gene sequence:

>249_bases
ATGCTTGTACTAACGCGCAAATTGAAAGAAGCGATTCAAATCGGCGATGACATCGAAATCACCGTCCTCGCCATCCAAGG
CGATCAAGTGAAACTTGGCATCAACGCACCGAAACACGTCGAAATCCATCGCAAAGAAATTTACCTCGCCATCCAAGCCG
AAAACAACGCCGCCTCCCACGCCTCCAAATCATCGCTCAAGCGATTGAACGAGCAATTGAAACACTTGAAAGGGGGGAAA
CAAGCATGA

Upstream 100 bases:

>100_bases
ATAAGCGACTTGGGAAGCAAGTTATTTTAACAAACACGAACTACAAAACGAAACATCGCCTCTTTCCTGAAAAAGTGGCG
AAATAAAGGAGGCGGCAAAT

Downstream 100 bases:

>100_bases
GCGTCAGCGTCGGCGGAGTGCCAGTCCAAGGCGTCGTTGCGCGCATTGTGCAAGATAATAAGGCCATTGCCGAACAAGCT
CTAAACGAAATAATCAACAA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MLVLTRKLKEAIQIGDDIEITVLAIQGDQVKLGINAPKHVEIHRKEIYLAIQAENNAASHASKSSLKRLNEQLKHLKGGK
QA

Sequences:

>Translated_82_residues
MLVLTRKLKEAIQIGDDIEITVLAIQGDQVKLGINAPKHVEIHRKEIYLAIQAENNAASHASKSSLKRLNEQLKHLKGGK
QA
>Mature_82_residues
MLVLTRKLKEAIQIGDDIEITVLAIQGDQVKLGINAPKHVEIHRKEIYLAIQAENNAASHASKSSLKRLNEQLKHLKGGK
QA

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=59, Percent_Identity=52.5423728813559, Blast_Score=75, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 9076; Mature: 9076

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTRKLKEAIQIGDDIEITVLAIQGDQVKLGINAPKHVEIHRKEIYLAIQAENNAASH
CEEEHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEEEEEEEEECCCCCCH
ASKSSLKRLNEQLKHLKGGKQA
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLVLTRKLKEAIQIGDDIEITVLAIQGDQVKLGINAPKHVEIHRKEIYLAIQAENNAASH
CEEEHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEEEEEEEEECCCCCCH
ASKSSLKRLNEQLKHLKGGKQA
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA