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The map label for this gene is nifU [H]

Identifier: 138896548

GI number: 138896548

Start: 3016718

End: 3016960

Strand: Direct

Name: nifU [H]

Synonym: GTNG_2911

Alternate gene names: 138896548

Gene position: 3016718-3016960 (Clockwise)

Preceding gene: 138896546

Following gene: 138896554

Centisome position: 84.97

GC content: 51.44

Gene sequence:

>243_bases
ATGGAAATGACGGACCAAGAAATTAAAGAACAAGTGCAAGAAGTTTTAGATAAACTCCGCCCGTTCCTGCTTCGCGACGG
CGGTGACTGCGAACTTGTCGATGTGGAAGACGGCGTTGTAAAACTCCGCCTTCTCGGCGCATGCGGCAGCTGCCCAAGCT
CGACGATCACATTAAAAGCAGGAATCGAGCGCGCCTTGTTTGAAGAAGTGCCAGGCGTCGTTGAGGTCGAGCAAGTGTTT
TAA

Upstream 100 bases:

>100_bases
CCGGTTTGAACGCCATCATTGTCACCCTTTACGAAAGTAAAATTTATCATTAGATTTTTTCGGATACCATGATTATAATA
AAAAGTAAGGAAAGGAGTCG

Downstream 100 bases:

>100_bases
TCTCAAAAAAATCCGAACAGCCCACCGCTGTTCGGATTTTTTTACGCCTCAAGCGCCAGTTTGTACACGCGGCTACCGTG
CGGTTCAATAGCGAGCCATG

Product: nitrogen fixation protein NifU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MEMTDQEIKEQVQEVLDKLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGIERALFEEVPGVVEVEQVF

Sequences:

>Translated_80_residues
MEMTDQEIKEQVQEVLDKLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGIERALFEEVPGVVEVEQVF
>Mature_80_residues
MEMTDQEIKEQVQEVLDKLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKAGIERALFEEVPGVVEVEQVF

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins [H]

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI50593021, Length=76, Percent_Identity=48.6842105263158, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI50593025, Length=76, Percent_Identity=48.6842105263158, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI50593023, Length=77, Percent_Identity=48.0519480519481, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI50593019, Length=77, Percent_Identity=48.0519480519481, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17541876, Length=76, Percent_Identity=47.3684210526316, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322811, Length=78, Percent_Identity=47.4358974358974, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45551492, Length=77, Percent_Identity=46.7532467532467, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24643765, Length=77, Percent_Identity=46.7532467532467, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI45556188, Length=77, Percent_Identity=46.7532467532467, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001075
- ProDom:   PD002830 [H]

Pfam domain/function: PF01106 NifU [H]

EC number: NA

Molecular weight: Translated: 8822; Mature: 8822

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMTDQEIKEQVQEVLDKLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKA
CCCCHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEHH
GIERALFEEVPGVVEVEQVF
HHHHHHHHHCCCCEEEHCCC
>Mature Secondary Structure
MEMTDQEIKEQVQEVLDKLRPFLLRDGGDCELVDVEDGVVKLRLLGACGSCPSSTITLKA
CCCCHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEHH
GIERALFEEVPGVVEVEQVF
HHHHHHHHHCCCCEEEHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]