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The map label for this gene is xkdE [H]

Identifier: 138896465

GI number: 138896465

Start: 2942500

End: 2943945

Strand: Reverse

Name: xkdE [H]

Synonym: GTNG_2828

Alternate gene names: 138896465

Gene position: 2943945-2942500 (Counterclockwise)

Preceding gene: 138896466

Following gene: 138896464

Centisome position: 82.92

GC content: 51.18

Gene sequence:

>1446_bases
ATGCAGCAAAAACCAGTGGCTAAGGCGTTCGTTCTTAGTGATGGGGAGATCATCGAGGAAAGCACGCTCGAACGCTACGC
GATCAAACAATCGGGCGAATCGAGAGCCATCCCAAGCGACCGTTTTGACGGCAAGTATGGGGAATTGGGGCTTGTCGAAC
CTCTTTACAATTTTGAAGCACTGGCACAATTGCTCGAAATCAACCCGTACCATTATCGAGCGGTTAAAACGAAGGCGCGG
GATACTGCAGGGCTAGGATGGTATCTTGAAGCGAAAACGAACAACCCAAGCGAACAGCAGCGCGAAATCGCCATGCAGTT
TTTAGAGAACCCGAACCCGTACAAGACGCTGACCGACATCAATAACAACGTGATGGTGGACTACGATTCCATTGGGAACG
GATATTATGAGGTCATCCGAGCCGAAGACGGCACGCTTGTCGGTCTGGAGCATATTCCGGCGCATACGGTTCGCGTTCAT
CAGGATATGAACCGATATTGCCAAATTCGCGGCGTGAAGAAGGTATGGTTCAAGCGGTTTGGCTTTGAAAATGACGTGGA
CTACGTGACGGGCGAAATCGCGCCTGCCGGTTCAATTCCGATCGAACGACGGGCAACAGAAATCATTCACGTCCACAATT
ATACGAGCCGGAGTGACTATTACGGCTTGCCGGACATTTTGCCCGCGCTAAGCGCGATTATTTCCGACCGGGAGCGGGCG
GAGTACAACATCAGTTTCTTTGAAAATCACGCCGTTCCAGCGTATGTCGTGACGGTGACAGGAGCGGAACTCGACGAGCA
AACGAAGCAATTGATCCGACGATACTTTCAACAGGACATCAAGAAAAATCGGCATTCAACCCTTGTAGTGACGGCGCAAA
AGCCGCAAGGTGATTTCTCGGACACGCCAGTCGAAATCAAGTTCCAAGCGTTGTCCGTGGAGACGAAGGAAGCAAGTTTC
CGTATGTTGAGGGCGGACAATCGCGATGAAATCTTATCCGCGCATGGCGTTCCGCCTTATCGCGCTGGGATTGTCGTCGA
GGGGTCGCTTGGCGGCTCAACGGCGAGGGAGTCAACGGAAATCTACAAGCAATCAGTCATCGAGCCGAGACAAGACATGC
TTGAAAATGTGATGAACCGATTGCTATCCGTCGGGCTAGGAATCACCGACTGGCGTTTCCGTTTCAAAGACATCGACACG
AAAGACACGCAAACGAAAATCGAGGAATTGCGATTCCTGTTTGACATCGGTGCGTACAGTCCGAACATGATTTTGCGTGA
GCTAGGGAAGGAGCCGATTGACGACCCGAACCTAGACAGACATTTCATTTTCGGGCAACCACTTGACGCCTCACAACAAG
AAACGAACGCGATACTGAATTCGCTGAAACAGCTGCACGCCAAACTGATTGATATTGCCACGAAAGAAGGCGGCAAGCAT
GTGTAA

Upstream 100 bases:

>100_bases
CCAAGTGGACGCGACATCACAAGCGTTGCAGTACCTCAACAGATCGGGAACGAAAGGAACAATCAAAGTGGACGTCTTCT
AACGAAGGGAGGGAAGCGGT

Downstream 100 bases:

>100_bases
GGTGTGCAAGCTGTTGGAAATGGATCGCGAGCTTGTGTCATTCCTTGTTGAGCACGGCGCGCTTCCTGCGTTTAAAGAGC
AGGACGAGCGCATTTCCGAA

Product: putative portal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MQQKPVAKAFVLSDGEIIEESTLERYAIKQSGESRAIPSDRFDGKYGELGLVEPLYNFEALAQLLEINPYHYRAVKTKAR
DTAGLGWYLEAKTNNPSEQQREIAMQFLENPNPYKTLTDINNNVMVDYDSIGNGYYEVIRAEDGTLVGLEHIPAHTVRVH
QDMNRYCQIRGVKKVWFKRFGFENDVDYVTGEIAPAGSIPIERRATEIIHVHNYTSRSDYYGLPDILPALSAIISDRERA
EYNISFFENHAVPAYVVTVTGAELDEQTKQLIRRYFQQDIKKNRHSTLVVTAQKPQGDFSDTPVEIKFQALSVETKEASF
RMLRADNRDEILSAHGVPPYRAGIVVEGSLGGSTARESTEIYKQSVIEPRQDMLENVMNRLLSVGLGITDWRFRFKDIDT
KDTQTKIEELRFLFDIGAYSPNMILRELGKEPIDDPNLDRHFIFGQPLDASQQETNAILNSLKQLHAKLIDIATKEGGKH
V

Sequences:

>Translated_481_residues
MQQKPVAKAFVLSDGEIIEESTLERYAIKQSGESRAIPSDRFDGKYGELGLVEPLYNFEALAQLLEINPYHYRAVKTKAR
DTAGLGWYLEAKTNNPSEQQREIAMQFLENPNPYKTLTDINNNVMVDYDSIGNGYYEVIRAEDGTLVGLEHIPAHTVRVH
QDMNRYCQIRGVKKVWFKRFGFENDVDYVTGEIAPAGSIPIERRATEIIHVHNYTSRSDYYGLPDILPALSAIISDRERA
EYNISFFENHAVPAYVVTVTGAELDEQTKQLIRRYFQQDIKKNRHSTLVVTAQKPQGDFSDTPVEIKFQALSVETKEASF
RMLRADNRDEILSAHGVPPYRAGIVVEGSLGGSTARESTEIYKQSVIEPRQDMLENVMNRLLSVGLGITDWRFRFKDIDT
KDTQTKIEELRFLFDIGAYSPNMILRELGKEPIDDPNLDRHFIFGQPLDASQQETNAILNSLKQLHAKLIDIATKEGGKH
V
>Mature_481_residues
MQQKPVAKAFVLSDGEIIEESTLERYAIKQSGESRAIPSDRFDGKYGELGLVEPLYNFEALAQLLEINPYHYRAVKTKAR
DTAGLGWYLEAKTNNPSEQQREIAMQFLENPNPYKTLTDINNNVMVDYDSIGNGYYEVIRAEDGTLVGLEHIPAHTVRVH
QDMNRYCQIRGVKKVWFKRFGFENDVDYVTGEIAPAGSIPIERRATEIIHVHNYTSRSDYYGLPDILPALSAIISDRERA
EYNISFFENHAVPAYVVTVTGAELDEQTKQLIRRYFQQDIKKNRHSTLVVTAQKPQGDFSDTPVEIKFQALSVETKEASF
RMLRADNRDEILSAHGVPPYRAGIVVEGSLGGSTARESTEIYKQSVIEPRQDMLENVMNRLLSVGLGITDWRFRFKDIDT
KDTQTKIEELRFLFDIGAYSPNMILRELGKEPIDDPNLDRHFIFGQPLDASQQETNAILNSLKQLHAKLIDIATKEGGKH
V

Specific function: Unknown

COG id: COG5518

COG function: function code R; Bacteriophage capsid portal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. PBSX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR016753
- InterPro:   IPR006430 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 54695; Mature: 54695

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQKPVAKAFVLSDGEIIEESTLERYAIKQSGESRAIPSDRFDGKYGELGLVEPLYNFEA
CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHH
LAQLLEINPYHYRAVKTKARDTAGLGWYLEAKTNNPSEQQREIAMQFLENPNPYKTLTDI
HHHHHHCCCCCEEEEHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEC
NNNVMVDYDSIGNGYYEVIRAEDGTLVGLEHIPAHTVRVHQDMNRYCQIRGVKKVWFKRF
CCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHC
GFENDVDYVTGEIAPAGSIPIERRATEIIHVHNYTSRSDYYGLPDILPALSAIISDRERA
CCCCCCCCEECCCCCCCCCCHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHC
EYNISFFENHAVPAYVVTVTGAELDEQTKQLIRRYFQQDIKKNRHSTLVVTAQKPQGDFS
EEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
DTPVEIKFQALSVETKEASFRMLRADNRDEILSAHGVPPYRAGIVVEGSLGGSTARESTE
CCCEEEEEEEEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHH
IYKQSVIEPRQDMLENVMNRLLSVGLGITDWRFRFKDIDTKDTQTKIEELRFLFDIGAYS
HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
PNMILRELGKEPIDDPNLDRHFIFGQPLDASQQETNAILNSLKQLHAKLIDIATKEGGKH
HHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
V
C
>Mature Secondary Structure
MQQKPVAKAFVLSDGEIIEESTLERYAIKQSGESRAIPSDRFDGKYGELGLVEPLYNFEA
CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHH
LAQLLEINPYHYRAVKTKARDTAGLGWYLEAKTNNPSEQQREIAMQFLENPNPYKTLTDI
HHHHHHCCCCCEEEEHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEC
NNNVMVDYDSIGNGYYEVIRAEDGTLVGLEHIPAHTVRVHQDMNRYCQIRGVKKVWFKRF
CCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHC
GFENDVDYVTGEIAPAGSIPIERRATEIIHVHNYTSRSDYYGLPDILPALSAIISDRERA
CCCCCCCCEECCCCCCCCCCHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHC
EYNISFFENHAVPAYVVTVTGAELDEQTKQLIRRYFQQDIKKNRHSTLVVTAQKPQGDFS
EEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
DTPVEIKFQALSVETKEASFRMLRADNRDEILSAHGVPPYRAGIVVEGSLGGSTARESTE
CCCEEEEEEEEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHH
IYKQSVIEPRQDMLENVMNRLLSVGLGITDWRFRFKDIDTKDTQTKIEELRFLFDIGAYS
HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
PNMILRELGKEPIDDPNLDRHFIFGQPLDASQQETNAILNSLKQLHAKLIDIATKEGGKH
HHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]