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The map label for this gene is yrhP [H]

Identifier: 138896424

GI number: 138896424

Start: 2905042

End: 2905710

Strand: Reverse

Name: yrhP [H]

Synonym: GTNG_2787

Alternate gene names: 138896424

Gene position: 2905710-2905042 (Counterclockwise)

Preceding gene: 138896425

Following gene: 138896422

Centisome position: 81.84

GC content: 52.02

Gene sequence:

>669_bases
GTGGACGACCGTTTGCTAGCTTGGTCAGGGGGGAGACGTGTGTTAGGCATTACAAGCTATGGGATGTATTTGCTGGCGTC
GATTTTGATGCATGCCACTCCGGGAGTGGATACGATGTATATTATGGGGCGCAGTGTGGCGCAAGGGAGAAAAGCGGGCG
TGTATTCGGTGTTGGGCATTTCGACAGGAGTGTTCGTTCATACGCTGCTCGCTGCGTTTGGCTTAGCCGTGATTTTGCAG
CAGTCGGTTGTCTTATTTACGGCTGTGAAAATTGCTGGTGCGGCGTATTTGGTGTATCTTGGCATCAAAATGATGCGGCA
GCCGGCGCCGCCAGCGCTGGAGTCTGAGGAATTGGCGCCGACGAAGCTGAAAAAGATTTATTGGCAAGGCGTGACGACCA
ATGTGATGAATCCGAAAGTGGCGTTGTTTTTCCTTTCCTTTTTGCCGCAATTCATTCAAACGGATCAGCCATACGGCCCG
CTTCCGTTTTTGTTGCTTGGTTTGTCGTTCGTTGTGACGAGCACGATGTGGGGGCTTGGCGTCGTCTATGTTGCTGCGCT
AGCAACGAAACGGGTGCGCCAAAACGCCAAAATGGCGCTTCTCATCAATCGATTGACGGGGATTGTGTTTGTTGGGCTTG
GTGTGAAGCTGTTGCAGACGAAAGCATGA

Upstream 100 bases:

>100_bases
TTGGAATCATGGGTTTTGGAAAACGACCCGCTTTTGTCACTGTATCGGTGGTGAAGCTACCAACCTTTTGTGACATTGCA
CGAAAGCGGTGCTGCGGTCC

Downstream 100 bases:

>100_bases
TGAGCGGGCTTGCCAAAACAGCCCGCTCGCTTTGTTTGCCCCCTACGACCGCTCGCTGAAGGCGATTTGGATGCCGATGA
CGGCAAAGAGGACGCCTTTT

Product: homoserine/homoserine lactone efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MDDRLLAWSGGRRVLGITSYGMYLLASILMHATPGVDTMYIMGRSVAQGRKAGVYSVLGISTGVFVHTLLAAFGLAVILQ
QSVVLFTAVKIAGAAYLVYLGIKMMRQPAPPALESEELAPTKLKKIYWQGVTTNVMNPKVALFFLSFLPQFIQTDQPYGP
LPFLLLGLSFVVTSTMWGLGVVYVAALATKRVRQNAKMALLINRLTGIVFVGLGVKLLQTKA

Sequences:

>Translated_222_residues
MDDRLLAWSGGRRVLGITSYGMYLLASILMHATPGVDTMYIMGRSVAQGRKAGVYSVLGISTGVFVHTLLAAFGLAVILQ
QSVVLFTAVKIAGAAYLVYLGIKMMRQPAPPALESEELAPTKLKKIYWQGVTTNVMNPKVALFFLSFLPQFIQTDQPYGP
LPFLLLGLSFVVTSTMWGLGVVYVAALATKRVRQNAKMALLINRLTGIVFVGLGVKLLQTKA
>Mature_222_residues
MDDRLLAWSGGRRVLGITSYGMYLLASILMHATPGVDTMYIMGRSVAQGRKAGVYSVLGISTGVFVHTLLAAFGLAVILQ
QSVVLFTAVKIAGAAYLVYLGIKMMRQPAPPALESEELAPTKLKKIYWQGVTTNVMNPKVALFFLSFLPQFIQTDQPYGP
LPFLLLGLSFVVTSTMWGLGVVYVAALATKRVRQNAKMALLINRLTGIVFVGLGVKLLQTKA

Specific function: Unknown

COG id: COG1280

COG function: function code E; Putative threonine efflux protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rht family [H]

Homologues:

Organism=Escherichia coli, GI1788099, Length=202, Percent_Identity=28.7128712871287, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI48994979, Length=200, Percent_Identity=31, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI48994978, Length=202, Percent_Identity=28.2178217821782, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1786522, Length=126, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004778
- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 24070; Mature: 24070

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDRLLAWSGGRRVLGITSYGMYLLASILMHATPGVDTMYIMGRSVAQGRKAGVYSVLGI
CCCCEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
STGVFVHTLLAAFGLAVILQQSVVLFTAVKIAGAAYLVYLGIKMMRQPAPPALESEELAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
TKLKKIYWQGVTTNVMNPKVALFFLSFLPQFIQTDQPYGPLPFLLLGLSFVVTSTMWGLG
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVYVAALATKRVRQNAKMALLINRLTGIVFVGLGVKLLQTKA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCC
>Mature Secondary Structure
MDDRLLAWSGGRRVLGITSYGMYLLASILMHATPGVDTMYIMGRSVAQGRKAGVYSVLGI
CCCCEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
STGVFVHTLLAAFGLAVILQQSVVLFTAVKIAGAAYLVYLGIKMMRQPAPPALESEELAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
TKLKKIYWQGVTTNVMNPKVALFFLSFLPQFIQTDQPYGPLPFLLLGLSFVVTSTMWGLG
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVYVAALATKRVRQNAKMALLINRLTGIVFVGLGVKLLQTKA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377; 9308178 [H]