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The map label for this gene is 138896396

Identifier: 138896396

GI number: 138896396

Start: 2876529

End: 2876906

Strand: Reverse

Name: 138896396

Synonym: GTNG_2759

Alternate gene names: NA

Gene position: 2876906-2876529 (Counterclockwise)

Preceding gene: 138896397

Following gene: 138896395

Centisome position: 81.03

GC content: 50.53

Gene sequence:

>378_bases
ATGATCGGTGTTCCGCTGTTCGGTTCGCTTGTGTCGGTATTTGTCGGCAGCGTGGACTCATTCGTCGTCATTTTGCTTGC
ATTAGTGATTGTCGATTACATTACTGGCATTGTCGCTAGTGCGATGGAAGGCAAGCTGTCAAGCCAGGTCGGGTTTCGCG
GCATCGTCCGCAAGTTGTTGATTTTTGTGCTCACGGCAGCGGCGCATTTAGTCGATTTGGCCATCGGCTGGAACATGCAC
TTGATTCGCGACGCGATCGTATTTTTCTATATTGCCAATGAATTTATTTCGATCGTGGAAAACGCCGGGCGGGCCGGTGT
TCCGATTCCCGCCGTGCTGCGAAAAGCGATCGAGTTGTTGAAAGATGAGATGAAATGA

Upstream 100 bases:

>100_bases
GTTTAGGGAAACCGCCGCGTCTTGCTTTTTCCCCTTGGCATAGAATAGGGTACGCGTATCCTATGTTCAAGGGGAGAGAG
CCGTGAACAAGCCAATTCCG

Downstream 100 bases:

>100_bases
TTTCCCCTGATGACGAGTTCATCGGGGGTTTTTGTTTACAATGAATCGTTCTTATTGCTAGATGAATCCGAAGGCTCAAT
CACCAACCTTCAAGAAAAGC

Product: prophage LambdaBa01, holin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MIGVPLFGSLVSVFVGSVDSFVVILLALVIVDYITGIVASAMEGKLSSQVGFRGIVRKLLIFVLTAAAHLVDLAIGWNMH
LIRDAIVFFYIANEFISIVENAGRAGVPIPAVLRKAIELLKDEMK

Sequences:

>Translated_125_residues
MIGVPLFGSLVSVFVGSVDSFVVILLALVIVDYITGIVASAMEGKLSSQVGFRGIVRKLLIFVLTAAAHLVDLAIGWNMH
LIRDAIVFFYIANEFISIVENAGRAGVPIPAVLRKAIELLKDEMK
>Mature_125_residues
MIGVPLFGSLVSVFVGSVDSFVVILLALVIVDYITGIVASAMEGKLSSQVGFRGIVRKLLIFVLTAAAHLVDLAIGWNMH
LIRDAIVFFYIANEFISIVENAGRAGVPIPAVLRKAIELLKDEMK

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 13484; Mature: 13484

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGVPLFGSLVSVFVGSVDSFVVILLALVIVDYITGIVASAMEGKLSSQVGFRGIVRKLL
CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFVLTAAAHLVDLAIGWNMHLIRDAIVFFYIANEFISIVENAGRAGVPIPAVLRKAIELL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KDEMK
HHHCC
>Mature Secondary Structure
MIGVPLFGSLVSVFVGSVDSFVVILLALVIVDYITGIVASAMEGKLSSQVGFRGIVRKLL
CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFVLTAAAHLVDLAIGWNMHLIRDAIVFFYIANEFISIVENAGRAGVPIPAVLRKAIELL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KDEMK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]