Click here to switch to the map view.

The map label for this gene is dnaB [H]

Identifier: 138896283

GI number: 138896283

Start: 2754315

End: 2755706

Strand: Reverse

Name: dnaB [H]

Synonym: GTNG_2646

Alternate gene names: 138896283

Gene position: 2755706-2754315 (Counterclockwise)

Preceding gene: 138896284

Following gene: 138896282

Centisome position: 77.62

GC content: 50.29

Gene sequence:

>1392_bases
ATGGAACATCATTGGAAAGAACTGATTGCCGTCGACCGGTACATGGTACAAAGCCGCGGAGTATTGCATGATGTGGATCG
AAAAGTGTTGACGATGCTCTATCAGCCGCTCATTGGCTATCGCGCGCTCGCGCTTTATATGACGCTTTGGGGGGAACTTG
AGCTGCTCGGCGGCCGGGAAGCGACTCACCATCGGCTGATGGCGCTTATGCAATGCGGGCTGCCGGACATTTATAGTGAA
CGGCTCAAACTTGAAGGAATCGGACTGTTGAATACATACGTCCGTGTTTGGGAAAAGGAAGAGCCGAAACAGTTTCTTTA
TGAATTGCGTCCGCCGCTGGCGCCCGATCAGTTTTTCCGCGACGAAATGCTCGGTGTCTTTTTGTATCGGCAAGTCGGTC
GCCATTTGTTTGCCCAACTGAACGAGTTTTTTGCCCGCCCCTCGATTGACGAGACGAAGTTTACCCGAGTGACACGTTCG
TTTTCTGACGTCTTTTCAGCCGTCCAAGCCGAACAAATCGTCGCCGGTTTTAGCGAAGAAGCCGGACATGAACTCGAGCC
GCCGGACGGAAAGGTGCATATTGGGCGGGACGGGGCATCGTATACGCTCGATGACGACGTGTTTGATTTTGAACTGTTTT
TTGCCGGACTGTCGAAACAATTGGTGCCGCGTCGAGCAGTGACGGCAAAAGTGAAAGAAGCAATTAAAAAGTTGGCATTT
TTATACGGCATTCCGCCGCTTGAAATGCAAAAAATCGTTCTTGGTGTCATCGATCCCGCTTACCATATCGATATTGATGC
GTTGCGTCAAGCGGCGCGTGAATGGTATGAGCTTGAGCATGGCGGTGCCGCACCACGGCTTGTCGAGCGGGTGCAGCCGC
TCGCCCATCGGACGATGGAGAATGTTGAACCACGCACGAAGGAAGAGCAGCTGATGAAGCAGCTCGAAACGATTTCTCCA
CGTCAGCTGTTGAAAGAAATTTCAGGTGGTGCTGAACCGTCGCTAGGGGATTTGCAGTTGATTGAAGACGTTATGTTTCA
GCAGCAGCTTCTTCCTGGTGTTGTCAACGTGTTGATTTATTACGTTATGCTGCGGACGAATATGAAACTATCAAAAAAAT
ATGTCGAAAAAATCGCCAGTCATTGGGCGCGCAAAAAAGTGCGGACGGTCAAAGAGGCCATGGAGTTAGCCAAAGAGGAA
GCAAAGACATACCAACAGTGGGCGAATGAAAAAGAAAAAGGGGTACGGCCAGTGCGAAAAGTCGTGCGCACAGAAATTGT
TCCTGACTGGCTGAAGATGGATTACAGTCAACCGGACGATGACGATTTTGATGTGGAACAGGCGCGCAAAGAGCTTGAAG
AACGGCTGAAAAAATATCGTGATGGATCGTAG

Upstream 100 bases:

>100_bases
GCTTTCGCGTTAGGCAGCAAGCCCTTTTTTCAACGTTTTTTCGGGCAGGAAAGGAGAGAGGCGGGTTGAAACGAATACGA
CGAAATGGAAGGTTGGGACG

Downstream 100 bases:

>100_bases
GTGTAAAAGCAATGGAACGAGTAAACCACTTGTTGCAGCGGTTGCTTGGCAACCAAGGGTTTAAGCAGCGTTATGAACAA
ATGAGGACCTATATTTTGAC

Product: replication initiation and membrane attachment protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MEHHWKELIAVDRYMVQSRGVLHDVDRKVLTMLYQPLIGYRALALYMTLWGELELLGGREATHHRLMALMQCGLPDIYSE
RLKLEGIGLLNTYVRVWEKEEPKQFLYELRPPLAPDQFFRDEMLGVFLYRQVGRHLFAQLNEFFARPSIDETKFTRVTRS
FSDVFSAVQAEQIVAGFSEEAGHELEPPDGKVHIGRDGASYTLDDDVFDFELFFAGLSKQLVPRRAVTAKVKEAIKKLAF
LYGIPPLEMQKIVLGVIDPAYHIDIDALRQAAREWYELEHGGAAPRLVERVQPLAHRTMENVEPRTKEEQLMKQLETISP
RQLLKEISGGAEPSLGDLQLIEDVMFQQQLLPGVVNVLIYYVMLRTNMKLSKKYVEKIASHWARKKVRTVKEAMELAKEE
AKTYQQWANEKEKGVRPVRKVVRTEIVPDWLKMDYSQPDDDDFDVEQARKELEERLKKYRDGS

Sequences:

>Translated_463_residues
MEHHWKELIAVDRYMVQSRGVLHDVDRKVLTMLYQPLIGYRALALYMTLWGELELLGGREATHHRLMALMQCGLPDIYSE
RLKLEGIGLLNTYVRVWEKEEPKQFLYELRPPLAPDQFFRDEMLGVFLYRQVGRHLFAQLNEFFARPSIDETKFTRVTRS
FSDVFSAVQAEQIVAGFSEEAGHELEPPDGKVHIGRDGASYTLDDDVFDFELFFAGLSKQLVPRRAVTAKVKEAIKKLAF
LYGIPPLEMQKIVLGVIDPAYHIDIDALRQAAREWYELEHGGAAPRLVERVQPLAHRTMENVEPRTKEEQLMKQLETISP
RQLLKEISGGAEPSLGDLQLIEDVMFQQQLLPGVVNVLIYYVMLRTNMKLSKKYVEKIASHWARKKVRTVKEAMELAKEE
AKTYQQWANEKEKGVRPVRKVVRTEIVPDWLKMDYSQPDDDDFDVEQARKELEERLKKYRDGS
>Mature_463_residues
MEHHWKELIAVDRYMVQSRGVLHDVDRKVLTMLYQPLIGYRALALYMTLWGELELLGGREATHHRLMALMQCGLPDIYSE
RLKLEGIGLLNTYVRVWEKEEPKQFLYELRPPLAPDQFFRDEMLGVFLYRQVGRHLFAQLNEFFARPSIDETKFTRVTRS
FSDVFSAVQAEQIVAGFSEEAGHELEPPDGKVHIGRDGASYTLDDDVFDFELFFAGLSKQLVPRRAVTAKVKEAIKKLAF
LYGIPPLEMQKIVLGVIDPAYHIDIDALRQAAREWYELEHGGAAPRLVERVQPLAHRTMENVEPRTKEEQLMKQLETISP
RQLLKEISGGAEPSLGDLQLIEDVMFQQQLLPGVVNVLIYYVMLRTNMKLSKKYVEKIASHWARKKVRTVKEAMELAKEE
AKTYQQWANEKEKGVRPVRKVVRTEIVPDWLKMDYSQPDDDDFDVEQARKELEERLKKYRDGS

Specific function: Probable component of primosome involved in the initiation of DNA replication. It is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 [H]

COG id: COG3611

COG function: function code L; Replication initiation/membrane attachment protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 53749; Mature: 53749

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00019 ACTININ_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3027697; 3027671; 8969504; 9387221; 9384377 [H]