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The map label for this gene is infC [H]

Identifier: 138896279

GI number: 138896279

Start: 2749076

End: 2749468

Strand: Reverse

Name: infC [H]

Synonym: GTNG_2642

Alternate gene names: 138896279

Gene position: 2749468-2749076 (Counterclockwise)

Preceding gene: 138896280

Following gene: 138896278

Centisome position: 77.44

GC content: 50.13

Gene sequence:

>393_bases
TTGGACCTTGTGCTTGTCGCCCCGAACGCCAAACCGCCTGTTTGCCGTATCATGGACTACGGCAAATTCCGCTTTGAGCA
GCAAAAGAAAGAAAAAGAAGCGCGCAAAAAGCAAAAGGTGATCAACATTAAAGAGGTGCGCCTCAGCCCGACGATTGAGG
AACACGACTTTAATACGAAACTACGCAATGCGCGCAAGTTTTTAGAAAAAGGCGATAAAGTGAAGGCGACGATCCGCTTT
AAAGGGCGGGCGATCACCCATAAAGAAATCGGGCAGCGCGTCCTTGACCGCTTCTCGGAAGCATGCGCTGATATCGCGGT
CGTCGAAACGGCGCCGAAATTGGAAGGGCGCAACATGTTTTTAGTGCTGGCACCGAAAAATGACAACAAGTAA

Upstream 100 bases:

>100_bases
ACAAATTCGTGCCCGCGAAGTGCGCTTAATCGATCAAAACGGCGATCAGCTCGGCATTAAGTCGAAGCAGGAAGCGCTCG
AGATCGCGGCAAGACGCAAC

Downstream 100 bases:

>100_bases
GGAGGAACTACGATGCCAAAAATGAAAACTCACCGCGGCTCGGCCAAACGGTTCAAAAAAACGGCGAGCGGCAAATTAAA
ACGCGGTCATGCGTATACGA

Product: translation initiation factor IF3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARKKQKVINIKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRF
KGRAITHKEIGQRVLDRFSEACADIAVVETAPKLEGRNMFLVLAPKNDNK

Sequences:

>Translated_130_residues
MDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARKKQKVINIKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRF
KGRAITHKEIGQRVLDRFSEACADIAVVETAPKLEGRNMFLVLAPKNDNK
>Mature_130_residues
MDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARKKQKVINIKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRF
KGRAITHKEIGQRVLDRFSEACADIAVVETAPKLEGRNMFLVLAPKNDNK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=127, Percent_Identity=54.3307086614173, Blast_Score=132, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 15021; Mature: 15021

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARKKQKVINIKEVRLSPTIEEHDFNTK
CCEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH
LRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRFSEACADIAVVETAPKLEGRNMF
HHHHHHHHHCCCCEEEEEEECCCEECHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCEE
LVLAPKNDNK
EEEECCCCCC
>Mature Secondary Structure
MDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARKKQKVINIKEVRLSPTIEEHDFNTK
CCEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH
LRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRFSEACADIAVVETAPKLEGRNMF
HHHHHHHHHCCCCEEEEEEECCCEECHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCEE
LVLAPKNDNK
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2779520; 6884517; 1742345; 9614948; 7664745 [H]