Click here to switch to the map view.

The map label for this gene is yaaH [H]

Identifier: 138895991

GI number: 138895991

Start: 2469102

End: 2470514

Strand: Reverse

Name: yaaH [H]

Synonym: GTNG_2352

Alternate gene names: 138895991

Gene position: 2470514-2469102 (Counterclockwise)

Preceding gene: 138895992

Following gene: 138895989

Centisome position: 69.59

GC content: 55.34

Gene sequence:

>1413_bases
ATGATTATTCATGTCGTCCAGCGCGGGGAAGCGCTTTGGCAGCTGGCCCGCCGCTACGGTGTCCCGTTCGAGCGGCTCAT
TGCTGCCAATGAGCTGAACGATCCGAATCGGCTTGCTACCGGGCAAGCGGTTGTCATTCCGGTGCCGTATCGCTATCATA
CCGTTCGTGCAGGGGAAACGTTATGGCAGATCGCCCATTCGTATGGAGTGACGGTCGAAGCGATCGTACAGGCGAACCGA
ATCGCCAACCCGGCGCTCATTTATCCAGGCACAGCATTGTTGATCCCAGCTCGCATTCATACGGTGCGTGCGGGGGAAAC
GTTAGGGCAAATTGCCGCCGCCTACCAGGTCAGCGTCCAGCAAATCATTGAGTTTAATCCGATTGCCGATCCGAATATGA
TCGTTCCCGGACAGCGGCTTGTCATTCCACCAGCCAAACCGATCATTGACGTGAATGCATTTACGATCGACCAGGGGGAG
AAAGGGGCGGAACAAGTGCGTGAAGTTGGCCGCCATTTGACATATGCCGCCCCGTTTGCCTATACGATGCGCGCTGATGG
TGGGCTGAATCCCATCAATGATGTGGCGATCATTCAGGCCGCCTCTGCTGCGCGCATCGTGCCGATGATGACGATCACGA
ATTTTACGTACGAAGACCCAGGCTCGCGGCTAGCGCAAACGATTTTAGCTGACGTTGCACTGCAAACGCGGTTGCTTGAC
AATATCATTCAAGTGATGCGAGCGAAAGGGTACCGGGCGTTGAATGTTGATTTTGAAAATGTCTACCCGTCCGACCGTGA
GCGGTACAATGCGTTTTTGCGGCGGGCGGCAGCTCGGCTTCACGCGGAAGGATATTTGCTATCGACATCGCTCGCGCCCA
AAGTCAGCGCGGAACAAAAAGGATTGCTGTATGAAGCGCACGATTATCCAGCTCACGGGCGCATCGCCGATTTCGTCGTG
CTCATGACGTATGAGTGGGGCTATCGGTTTGGACCGCCGCAAGCGATTTCTCCGGTGAATCAAATTCGGCGCGTACTTGA
TTATGCCGTGACGGCGATCCCGCGAGAGAAAATCATGATGGGGTTTCAAATTTATGCCCGTGATTGGGTGTTGCCGCACG
TGCAAGGACAAGAGGCAGAAACGTTCAGCCCGCAAGAAGCTGTGGAGCGCGCCATTCGCTACGGAGCATCCATTCAGTAC
GACCCTGTGGCCGCCTCGCCGTTTTATCGCTACACGGATGAGCAAGGACGCCGGCACGAAGTATGGTTTGAGGATGCTCG
CAGCGCGTTGGCGAAGTTTGAGCTGGTGAAAGAATACAGGTTGCGTGGAATCAGCTACTGGGTGCTCGGGTATCCGTATC
CGGAAAACTGGGTGCTGTTAGAAGACAATTTCCGCGTCCGCAAGCGCGGATAA

Upstream 100 bases:

>100_bases
AAACGCTGGTTTCCATTGTGAAACCAGCGTTTTTTTTACATAAAAAAGAGGAGGAAAAATATAGTGATAAAAGGAGAGGA
GAAACGAAGGGGGAGTGGCG

Downstream 100 bases:

>100_bases
GTCAAGTAGTTAGCGTGTATGTGCTAGTCATAGGGCATATGCTTTTCCCTTACGTTTTGAAGTTCGAGCTGCTTTTTCAA
TTGGTAGATTTCGGTGGTCA

Product: spore peptidoglycan hydrolase

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MIIHVVQRGEALWQLARRYGVPFERLIAANELNDPNRLATGQAVVIPVPYRYHTVRAGETLWQIAHSYGVTVEAIVQANR
IANPALIYPGTALLIPARIHTVRAGETLGQIAAAYQVSVQQIIEFNPIADPNMIVPGQRLVIPPAKPIIDVNAFTIDQGE
KGAEQVREVGRHLTYAAPFAYTMRADGGLNPINDVAIIQAASAARIVPMMTITNFTYEDPGSRLAQTILADVALQTRLLD
NIIQVMRAKGYRALNVDFENVYPSDRERYNAFLRRAAARLHAEGYLLSTSLAPKVSAEQKGLLYEAHDYPAHGRIADFVV
LMTYEWGYRFGPPQAISPVNQIRRVLDYAVTAIPREKIMMGFQIYARDWVLPHVQGQEAETFSPQEAVERAIRYGASIQY
DPVAASPFYRYTDEQGRRHEVWFEDARSALAKFELVKEYRLRGISYWVLGYPYPENWVLLEDNFRVRKRG

Sequences:

>Translated_470_residues
MIIHVVQRGEALWQLARRYGVPFERLIAANELNDPNRLATGQAVVIPVPYRYHTVRAGETLWQIAHSYGVTVEAIVQANR
IANPALIYPGTALLIPARIHTVRAGETLGQIAAAYQVSVQQIIEFNPIADPNMIVPGQRLVIPPAKPIIDVNAFTIDQGE
KGAEQVREVGRHLTYAAPFAYTMRADGGLNPINDVAIIQAASAARIVPMMTITNFTYEDPGSRLAQTILADVALQTRLLD
NIIQVMRAKGYRALNVDFENVYPSDRERYNAFLRRAAARLHAEGYLLSTSLAPKVSAEQKGLLYEAHDYPAHGRIADFVV
LMTYEWGYRFGPPQAISPVNQIRRVLDYAVTAIPREKIMMGFQIYARDWVLPHVQGQEAETFSPQEAVERAIRYGASIQY
DPVAASPFYRYTDEQGRRHEVWFEDARSALAKFELVKEYRLRGISYWVLGYPYPENWVLLEDNFRVRKRG
>Mature_470_residues
MIIHVVQRGEALWQLARRYGVPFERLIAANELNDPNRLATGQAVVIPVPYRYHTVRAGETLWQIAHSYGVTVEAIVQANR
IANPALIYPGTALLIPARIHTVRAGETLGQIAAAYQVSVQQIIEFNPIADPNMIVPGQRLVIPPAKPIIDVNAFTIDQGE
KGAEQVREVGRHLTYAAPFAYTMRADGGLNPINDVAIIQAASAARIVPMMTITNFTYEDPGSRLAQTILADVALQTRLLD
NIIQVMRAKGYRALNVDFENVYPSDRERYNAFLRRAAARLHAEGYLLSTSLAPKVSAEQKGLLYEAHDYPAHGRIADFVV
LMTYEWGYRFGPPQAISPVNQIRRVLDYAVTAIPREKIMMGFQIYARDWVLPHVQGQEAETFSPQEAVERAIRYGASIQY
DPVAASPFYRYTDEQGRRHEVWFEDARSALAKFELVKEYRLRGISYWVLGYPYPENWVLLEDNFRVRKRG

Specific function: May be required for the L-alanine-stimulated germination pathway [H]

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 53079; Mature: 53079

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIHVVQRGEALWQLARRYGVPFERLIAANELNDPNRLATGQAVVIPVPYRYHTVRAGET
CEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEECHHH
LWQIAHSYGVTVEAIVQANRIANPALIYPGTALLIPARIHTVRAGETLGQIAAAYQVSVQ
HHHHHHHHCCCHHHHHHHHHCCCCEEECCCCEEEEEEHHEEEECCHHHHHHHHHHHHHHH
QIIEFNPIADPNMIVPGQRLVIPPAKPIIDVNAFTIDQGEKGAEQVREVGRHLTYAAPFA
HHHHCCCCCCCCEECCCCEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHCEEECCEE
YTMRADGGLNPINDVAIIQAASAARIVPMMTITNFTYEDPGSRLAQTILADVALQTRLLD
EEEECCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
NIIQVMRAKGYRALNVDFENVYPSDRERYNAFLRRAAARLHAEGYLLSTSLAPKVSAEQK
HHHHHHHHCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC
GLLYEAHDYPAHGRIADFVVLMTYEWGYRFGPPQAISPVNQIRRVLDYAVTAIPREKIMM
CCEEEECCCCCCCCCEEEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHCCHHHHHE
GFQIYARDWVLPHVQGQEAETFSPQEAVERAIRYGASIQYDPVAASPFYRYTDEQGRRHE
EEEEEEECEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCCCCCH
VWFEDARSALAKFELVKEYRLRGISYWVLGYPYPENWVLLEDNFRVRKRG
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECCCEEEECCC
>Mature Secondary Structure
MIIHVVQRGEALWQLARRYGVPFERLIAANELNDPNRLATGQAVVIPVPYRYHTVRAGET
CEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEECHHH
LWQIAHSYGVTVEAIVQANRIANPALIYPGTALLIPARIHTVRAGETLGQIAAAYQVSVQ
HHHHHHHHCCCHHHHHHHHHCCCCEEECCCCEEEEEEHHEEEECCHHHHHHHHHHHHHHH
QIIEFNPIADPNMIVPGQRLVIPPAKPIIDVNAFTIDQGEKGAEQVREVGRHLTYAAPFA
HHHHCCCCCCCCEECCCCEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHCEEECCEE
YTMRADGGLNPINDVAIIQAASAARIVPMMTITNFTYEDPGSRLAQTILADVALQTRLLD
EEEECCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
NIIQVMRAKGYRALNVDFENVYPSDRERYNAFLRRAAARLHAEGYLLSTSLAPKVSAEQK
HHHHHHHHCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC
GLLYEAHDYPAHGRIADFVVLMTYEWGYRFGPPQAISPVNQIRRVLDYAVTAIPREKIMM
CCEEEECCCCCCCCCEEEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHCCHHHHHE
GFQIYARDWVLPHVQGQEAETFSPQEAVERAIRYGASIQYDPVAASPFYRYTDEQGRRHE
EEEEEEECEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCCCCCH
VWFEDARSALAKFELVKEYRLRGISYWVLGYPYPENWVLLEDNFRVRKRG
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10419957 [H]