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The map label for this gene is deoB [H]

Identifier: 138895886

GI number: 138895886

Start: 2363075

End: 2364262

Strand: Reverse

Name: deoB [H]

Synonym: GTNG_2245

Alternate gene names: 138895886

Gene position: 2364262-2363075 (Counterclockwise)

Preceding gene: 138895887

Following gene: 138895885

Centisome position: 66.59

GC content: 55.56

Gene sequence:

>1188_bases
GTGAACACAACATATCGGCGCGTATTTTTAATTGTGCTCGATTCGGTCGGCATTGGTGAAGCGCCTGATGCTGAGAAATA
TAACGATAAAGGGGCGGACACGCTCGGCCATATTGCCGAACATCGCGGCGGCTTGCACATGCCGAATATGGCAAAGCTTG
GACTCAGTCATATTCGCGAGATTCAAGGGGTGCCGAAAGTCGATCATCCGCTCGCTTATTATACAAAAATGAAAGAGGCA
TCCGCCGGCAAAGACACGATGACCGGCCATTGGGAGCTGATGGGCCTTCGCATCGACAAGCCGTTCCGCGTTTTCCCAGA
CGGGTTTCCAGACGAACTGATCGCCGAACTCGAACGGCGTACGGGACGGAAAGTGATTGGCAACAAACCAGCGAGTGGGA
CGGCGATCATCGAAGAGTTGGGCGAGGAACATATGAAAACGGGGGCGCTCATCGTCTATACATCAGCTGACTCCGTCTTG
CAAATCGCTGCCCATGAAGAGGTCGTGCCACTTGATGAGCTGTATCGTATTTGTGAAATCGCCCGCGAGCTGACGCGCGA
TGAGCCGTACATGGTTGGACGCGTCATCGCCCGGCCGTTTGTCGGAATGCCGGGCCGCTTTGAGCGGACGCCAAACCGGC
ACGACTATGCGCTCAAGCCGTTCGGCCGCACGGTGATGAACGAGCTGAAAGACGCCGGGTATGATGTCATCGCCATTGGA
AAAATCGCCGATATTTACGATAATGAAGGGGTGACGCAGTCGTTGCGGACGGCGTCGAATATGGACGGCATGGATAAGCT
CATCGACACGCTCAGCATGGACTTTACCGGGCTCAGCTTCGTCAATCTTGTTGACTTTGACGCTAAGTACGGCCATCGCC
GCGACCCGCAAGGATACGGCGATGCGCTTGAAGAGTTTGACGCACGGCTCGCTGAGGTGCTGCCGCGGTTGACAACGGAT
GATTTGCTGATCATCACGGCTGATCACGGCAACGATCCGGTGCACCACGGGACGGACCATACGCGCGAATATGTGCCGCT
TTTAGTGTACAGTCCGCGTTTTCAAGGTGGAAAGCCTCTCCCGATCCGCGAGACATTCGCCGATGTCGGGGCAACGATCG
CCGATAATTTCCGCGTCCATATGCCGCCCTACGGAACAAGCTTTTTAGCGGAATTGGCGCAGCAGTGA

Upstream 100 bases:

>100_bases
TTGTCAGACTTCTGACCAATACAATAAGGGCGTGTTTTACCGGAAATATGGGAACGATAGGAAGAGAATCTATTTTCACT
GCAGGCGGGAGGAATGAATT

Downstream 100 bases:

>100_bases
ACAGCCGTCTATGATGAGAACATGTTGTGAGGGGGAAAAGGAATGGATCGACAAGCGATTAAAAAAGCAGCTGATTATTT
GCGCCAGCGTATGCCGGCTC

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNTTYRRVFLIVLDSVGIGEAPDAEKYNDKGADTLGHIAEHRGGLHMPNMAKLGLSHIREIQGVPKVDHPLAYYTKMKEA
SAGKDTMTGHWELMGLRIDKPFRVFPDGFPDELIAELERRTGRKVIGNKPASGTAIIEELGEEHMKTGALIVYTSADSVL
QIAAHEEVVPLDELYRICEIARELTRDEPYMVGRVIARPFVGMPGRFERTPNRHDYALKPFGRTVMNELKDAGYDVIAIG
KIADIYDNEGVTQSLRTASNMDGMDKLIDTLSMDFTGLSFVNLVDFDAKYGHRRDPQGYGDALEEFDARLAEVLPRLTTD
DLLIITADHGNDPVHHGTDHTREYVPLLVYSPRFQGGKPLPIRETFADVGATIADNFRVHMPPYGTSFLAELAQQ

Sequences:

>Translated_395_residues
MNTTYRRVFLIVLDSVGIGEAPDAEKYNDKGADTLGHIAEHRGGLHMPNMAKLGLSHIREIQGVPKVDHPLAYYTKMKEA
SAGKDTMTGHWELMGLRIDKPFRVFPDGFPDELIAELERRTGRKVIGNKPASGTAIIEELGEEHMKTGALIVYTSADSVL
QIAAHEEVVPLDELYRICEIARELTRDEPYMVGRVIARPFVGMPGRFERTPNRHDYALKPFGRTVMNELKDAGYDVIAIG
KIADIYDNEGVTQSLRTASNMDGMDKLIDTLSMDFTGLSFVNLVDFDAKYGHRRDPQGYGDALEEFDARLAEVLPRLTTD
DLLIITADHGNDPVHHGTDHTREYVPLLVYSPRFQGGKPLPIRETFADVGATIADNFRVHMPPYGTSFLAELAQQ
>Mature_395_residues
MNTTYRRVFLIVLDSVGIGEAPDAEKYNDKGADTLGHIAEHRGGLHMPNMAKLGLSHIREIQGVPKVDHPLAYYTKMKEA
SAGKDTMTGHWELMGLRIDKPFRVFPDGFPDELIAELERRTGRKVIGNKPASGTAIIEELGEEHMKTGALIVYTSADSVL
QIAAHEEVVPLDELYRICEIARELTRDEPYMVGRVIARPFVGMPGRFERTPNRHDYALKPFGRTVMNELKDAGYDVIAIG
KIADIYDNEGVTQSLRTASNMDGMDKLIDTLSMDFTGLSFVNLVDFDAKYGHRRDPQGYGDALEEFDARLAEVLPRLTTD
DLLIITADHGNDPVHHGTDHTREYVPLLVYSPRFQGGKPLPIRETFADVGATIADNFRVHMPPYGTSFLAELAQQ

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=411, Percent_Identity=45.985401459854, Blast_Score=331, Evalue=4e-92,
Organism=Escherichia coli, GI1789781, Length=434, Percent_Identity=29.7235023041475, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44051; Mature: 44051

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTYRRVFLIVLDSVGIGEAPDAEKYNDKGADTLGHIAEHRGGLHMPNMAKLGLSHIRE
CCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
IQGVPKVDHPLAYYTKMKEASAGKDTMTGHWELMGLRIDKPFRVFPDGFPDELIAELERR
HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEECCCCCHHHHHHHHHHH
TGRKVIGNKPASGTAIIEELGEEHMKTGALIVYTSADSVLQIAAHEEVVPLDELYRICEI
CCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHCCCCCCHHHHHHHHHH
ARELTRDEPYMVGRVIARPFVGMPGRFERTPNRHDYALKPFGRTVMNELKDAGYDVIAIG
HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCEEEEC
KIADIYDNEGVTQSLRTASNMDGMDKLIDTLSMDFTGLSFVNLVDFDAKYGHRRDPQGYG
CHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHEEECCHHCCCCCCCCCHH
DALEEFDARLAEVLPRLTTDDLLIITADHGNDPVHHGTDHTREYVPLLVYSPRFQGGKPL
HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
PIRETFADVGATIADNFRVHMPPYGTSFLAELAQQ
CHHHHHHHHCCHHHCCCEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MNTTYRRVFLIVLDSVGIGEAPDAEKYNDKGADTLGHIAEHRGGLHMPNMAKLGLSHIRE
CCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
IQGVPKVDHPLAYYTKMKEASAGKDTMTGHWELMGLRIDKPFRVFPDGFPDELIAELERR
HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEECCCCCHHHHHHHHHHH
TGRKVIGNKPASGTAIIEELGEEHMKTGALIVYTSADSVLQIAAHEEVVPLDELYRICEI
CCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHCCCCCCHHHHHHHHHH
ARELTRDEPYMVGRVIARPFVGMPGRFERTPNRHDYALKPFGRTVMNELKDAGYDVIAIG
HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCEEEEC
KIADIYDNEGVTQSLRTASNMDGMDKLIDTLSMDFTGLSFVNLVDFDAKYGHRRDPQGYG
CHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHEEECCHHCCCCCCCCCHH
DALEEFDARLAEVLPRLTTDDLLIITADHGNDPVHHGTDHTREYVPLLVYSPRFQGGKPL
HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
PIRETFADVGATIADNFRVHMPPYGTSFLAELAQQ
CHHHHHHHHCCHHHCCCEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA