Click here to switch to the map view.

The map label for this gene is ypbD [H]

Identifier: 138895821

GI number: 138895821

Start: 2304564

End: 2305151

Strand: Reverse

Name: ypbD [H]

Synonym: GTNG_2180

Alternate gene names: 138895821

Gene position: 2305151-2304564 (Counterclockwise)

Preceding gene: 138895822

Following gene: 138895820

Centisome position: 64.93

GC content: 47.79

Gene sequence:

>588_bases
ATGAGACGGCAAAGTGAACAAATCCGACATATGACAGACCGCGAAGTGCTTTTTCATCTTTATTTGACGCAAGCGTTGTT
GCTTATCGTTGCCGGCGTCGTCTCATTCTTTTTGTTCGATTGGACCGAGTGGCGCCAGCTTTGGCGGTTTGATCTGAGCG
ATGTGCTGTTATACGGAGTAGGTGCGGCGGCGCTCGTGTTGACGGCTGACTTTTTGGCGATGCGTTATTTGCCGGAAGAC
TGGCATGATGACGGCGGAGTGAATGAAAAAATTTTTCGCAACCGCTCCATTCCCCATCTCTTTTTTTTATGTGTGCTGAT
TGCCGTTACCGAAGAGTGGCTGTTTCGCGGCATCGTGCAGACACATTGGGGGCTTTGGGTGGCGAGTGCGATCTTTGCCG
TGCTGCATGTCCGTTATTTGGAAAAATGGTTTTTATTCTTCATGGTTATCCTTCTTAGCCTGTTTCTTGGCGTGCTGTAT
GAACGGACGGATAGTTTATGGGTGACAGTCATCGCTCATTTTTTAATTGATTTTGTGCTTGCTTTACATATTCGATTGAG
TCGGGAGACGGAGGAGGAAGAGGAGTAA

Upstream 100 bases:

>100_bases
CTCGATGCCTATATGCGTGACACCCGTCGCTTGGCTGCGGCGCCGATTCGCCATTGGCGTGAAGAGCTATGGCAAATGTT
TTTCAGCAGGGGGCGGCAAG

Downstream 100 bases:

>100_bases
AGAGATGGAAGGGACATCGAAGCGTCTAGAGCGGAGAAAACGGTCGGCGGCGGATACGAATACGCCGTTATCACGCCTAA
AAAGGCGGCGGCAAAAAGAA

Product: CAAX amino protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MRRQSEQIRHMTDREVLFHLYLTQALLLIVAGVVSFFLFDWTEWRQLWRFDLSDVLLYGVGAAALVLTADFLAMRYLPED
WHDDGGVNEKIFRNRSIPHLFFLCVLIAVTEEWLFRGIVQTHWGLWVASAIFAVLHVRYLEKWFLFFMVILLSLFLGVLY
ERTDSLWVTVIAHFLIDFVLALHIRLSRETEEEEE

Sequences:

>Translated_195_residues
MRRQSEQIRHMTDREVLFHLYLTQALLLIVAGVVSFFLFDWTEWRQLWRFDLSDVLLYGVGAAALVLTADFLAMRYLPED
WHDDGGVNEKIFRNRSIPHLFFLCVLIAVTEEWLFRGIVQTHWGLWVASAIFAVLHVRYLEKWFLFFMVILLSLFLGVLY
ERTDSLWVTVIAHFLIDFVLALHIRLSRETEEEEE
>Mature_195_residues
MRRQSEQIRHMTDREVLFHLYLTQALLLIVAGVVSFFLFDWTEWRQLWRFDLSDVLLYGVGAAALVLTADFLAMRYLPED
WHDDGGVNEKIFRNRSIPHLFFLCVLIAVTEEWLFRGIVQTHWGLWVASAIFAVLHVRYLEKWFLFFMVILLSLFLGVLY
ERTDSLWVTVIAHFLIDFVLALHIRLSRETEEEEE

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003675 [H]

Pfam domain/function: PF02517 Abi [H]

EC number: NA

Molecular weight: Translated: 23180; Mature: 23180

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRQSEQIRHMTDREVLFHLYLTQALLLIVAGVVSFFLFDWTEWRQLWRFDLSDVLLYGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAAALVLTADFLAMRYLPEDWHDDGGVNEKIFRNRSIPHLFFLCVLIAVTEEWLFRGIVQ
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
THWGLWVASAIFAVLHVRYLEKWFLFFMVILLSLFLGVLYERTDSLWVTVIAHFLIDFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALHIRLSRETEEEEE
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MRRQSEQIRHMTDREVLFHLYLTQALLLIVAGVVSFFLFDWTEWRQLWRFDLSDVLLYGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAAALVLTADFLAMRYLPEDWHDDGGVNEKIFRNRSIPHLFFLCVLIAVTEEWLFRGIVQ
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
THWGLWVASAIFAVLHVRYLEKWFLFFMVILLSLFLGVLYERTDSLWVTVIAHFLIDFVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALHIRLSRETEEEEE
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]