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The map label for this gene is ycjS [H]

Identifier: 138895660

GI number: 138895660

Start: 2133778

End: 2134857

Strand: Reverse

Name: ycjS [H]

Synonym: GTNG_2016

Alternate gene names: 138895660

Gene position: 2134857-2133778 (Counterclockwise)

Preceding gene: 138895661

Following gene: 138895659

Centisome position: 60.13

GC content: 55.74

Gene sequence:

>1080_bases
ATGGAAAACGCACGTCCAATTCGCCTCGGGTTAATCGGAGCTGGTGGGATTTCAACCGCACATATTCAAGCGGCGCTCAA
GCTCCCGGAGCGCGTCGTGCTGCAGGCCATTTGCGATGTCAACGAAAAAGCGGCCGCGGAAAAAGCGGAAACATACGGCA
TCCGCGACGTGTACCGCGACTATAAAGAGCTGCTCGCCTCACCAGATGTCGATGCCGTCATCATTACCGTGCCGAACTTT
TTGCATGCCCAAGTGGCGGTCGACAGCCTGCGGGCCGGGAAACACGTTCTTTGCGAAAAACCGATGGTGATGAAATCGGA
AGAGGCGGACGCCATCATTCGCGCCCGCGACGAATCAGGGAAACAGTTTATGGTGTCGCTGAACAACCGGTTCCGCCAAG
CGGCGCAATGGCTTCATGCACGCATCGCAGAAGGCGCATTCGGCGACATTTATTACGCCAAAACAGGTTGGGTGCGCCGC
CGTGGTATTCCTGCATGGGGGGCGTGGTTTTTTGACCGTGAGCGTTCCGGGGGCGGTCCGCTCATCGACTTAGGCGTTCA
TATGCTTGATGTCACGCTTTGGATGCTTGGAAACCCGAACCCGGTCGCGGTGACGGGGAAAACATACGCGAAGTTCGGTC
CACGTCATCAAGGGGCATGGCCGGGCACGTCGTTTGCGCCAAACGCTTCGTATACGGTGGAAGACTTTGCCTCGGCATTC
ATCCAACTGGAAAACGACGCGACTGTGCTGCTTGAGACGAGCTGGGCGTCGCACATTGAAGAGGAACGGGCATATGTCGA
GTTTCTCGGCACGGAAGGCGGTGTGCGCTGGGAGTGGAATGTGACCGGCAACCGTCAAGAAGTGAAATGGTTCCGCAGTG
AACACGGTGTCCCGGCTGACGTCACACTCCATTTTGACGACCAAGGCGAACGGGTGGCGTTGCTTGACCATTTCGTTACA
AGCATCACCAATAATACAACACCGCTTTGCACGGCAGAACAAGGACTCATGATCGCCAAAGTGTTAGAAGCGATTTATGC
ATCGTCCGAACAAGGGAAACAAGTCCGAATCGAATGGTAA

Upstream 100 bases:

>100_bases
GGGTGATGTAATCGATTACATCACTCGATGTGTTGCTTCAGATAAGTGGCAATCTAGAAACAAGTTGCTTGAAAACAAGT
GGATGCAAGGAGGAAACGAT

Downstream 100 bases:

>100_bases
GAGATCAACCACTTTGTGTATGCCGCGGCAAACCGAAATCCAATCGAGGGGGGATCACCATATGACAACACCAATCCGCG
TTGTCGTCTGGAACGAATTT

Product: dehydrogenases and related proteins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MENARPIRLGLIGAGGISTAHIQAALKLPERVVLQAICDVNEKAAAEKAETYGIRDVYRDYKELLASPDVDAVIITVPNF
LHAQVAVDSLRAGKHVLCEKPMVMKSEEADAIIRARDESGKQFMVSLNNRFRQAAQWLHARIAEGAFGDIYYAKTGWVRR
RGIPAWGAWFFDRERSGGGPLIDLGVHMLDVTLWMLGNPNPVAVTGKTYAKFGPRHQGAWPGTSFAPNASYTVEDFASAF
IQLENDATVLLETSWASHIEEERAYVEFLGTEGGVRWEWNVTGNRQEVKWFRSEHGVPADVTLHFDDQGERVALLDHFVT
SITNNTTPLCTAEQGLMIAKVLEAIYASSEQGKQVRIEW

Sequences:

>Translated_359_residues
MENARPIRLGLIGAGGISTAHIQAALKLPERVVLQAICDVNEKAAAEKAETYGIRDVYRDYKELLASPDVDAVIITVPNF
LHAQVAVDSLRAGKHVLCEKPMVMKSEEADAIIRARDESGKQFMVSLNNRFRQAAQWLHARIAEGAFGDIYYAKTGWVRR
RGIPAWGAWFFDRERSGGGPLIDLGVHMLDVTLWMLGNPNPVAVTGKTYAKFGPRHQGAWPGTSFAPNASYTVEDFASAF
IQLENDATVLLETSWASHIEEERAYVEFLGTEGGVRWEWNVTGNRQEVKWFRSEHGVPADVTLHFDDQGERVALLDHFVT
SITNNTTPLCTAEQGLMIAKVLEAIYASSEQGKQVRIEW
>Mature_359_residues
MENARPIRLGLIGAGGISTAHIQAALKLPERVVLQAICDVNEKAAAEKAETYGIRDVYRDYKELLASPDVDAVIITVPNF
LHAQVAVDSLRAGKHVLCEKPMVMKSEEADAIIRARDESGKQFMVSLNNRFRQAAQWLHARIAEGAFGDIYYAKTGWVRR
RGIPAWGAWFFDRERSGGGPLIDLGVHMLDVTLWMLGNPNPVAVTGKTYAKFGPRHQGAWPGTSFAPNASYTVEDFASAF
IQLENDATVLLETSWASHIEEERAYVEFLGTEGGVRWEWNVTGNRQEVKWFRSEHGVPADVTLHFDDQGERVALLDHFVT
SITNNTTPLCTAEQGLMIAKVLEAIYASSEQGKQVRIEW

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=259, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787574, Length=358, Percent_Identity=29.8882681564246, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI87082405, Length=223, Percent_Identity=28.2511210762332, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081947, Length=203, Percent_Identity=28.0788177339901, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581117, Length=192, Percent_Identity=31.7708333333333, Blast_Score=89, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 39925; Mature: 39925

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENARPIRLGLIGAGGISTAHIQAALKLPERVVLQAICDVNEKAAAEKAETYGIRDVYRD
CCCCCEEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
YKELLASPDVDAVIITVPNFLHAQVAVDSLRAGKHVLCEKPMVMKSEEADAIIRARDESG
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEECCCCC
KQFMVSLNNRFRQAAQWLHARIAEGAFGDIYYAKTGWVRRRGIPAWGAWFFDRERSGGGP
CEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCHHHEEEECCCCCCCC
LIDLGVHMLDVTLWMLGNPNPVAVTGKTYAKFGPRHQGAWPGTSFAPNASYTVEDFASAF
CHHHHHHEEEEEEEEECCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
IQLENDATVLLETSWASHIEEERAYVEFLGTEGGVRWEWNVTGNRQEVKWFRSEHGVPAD
EEECCCCEEEEECCHHHHHHHHHHEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCCEE
VTLHFDDQGERVALLDHFVTSITNNTTPLCTAEQGLMIAKVLEAIYASSEQGKQVRIEW
EEEEECCCCCEEHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCEEEEEC
>Mature Secondary Structure
MENARPIRLGLIGAGGISTAHIQAALKLPERVVLQAICDVNEKAAAEKAETYGIRDVYRD
CCCCCEEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
YKELLASPDVDAVIITVPNFLHAQVAVDSLRAGKHVLCEKPMVMKSEEADAIIRARDESG
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEECCCCC
KQFMVSLNNRFRQAAQWLHARIAEGAFGDIYYAKTGWVRRRGIPAWGAWFFDRERSGGGP
CEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCHHHEEEECCCCCCCC
LIDLGVHMLDVTLWMLGNPNPVAVTGKTYAKFGPRHQGAWPGTSFAPNASYTVEDFASAF
CHHHHHHEEEEEEEEECCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
IQLENDATVLLETSWASHIEEERAYVEFLGTEGGVRWEWNVTGNRQEVKWFRSEHGVPAD
EEECCCCEEEEECCHHHHHHHHHHEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCCEE
VTLHFDDQGERVALLDHFVTSITNNTTPLCTAEQGLMIAKVLEAIYASSEQGKQVRIEW
EEEEECCCCCEEHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]