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The map label for this gene is xerC [H]

Identifier: 138895610

GI number: 138895610

Start: 2087576

End: 2088169

Strand: Reverse

Name: xerC [H]

Synonym: GTNG_1963

Alternate gene names: 138895610

Gene position: 2088169-2087576 (Counterclockwise)

Preceding gene: 138895612

Following gene: 138895604

Centisome position: 58.82

GC content: 51.85

Gene sequence:

>594_bases
ATGTTGGAGCATGAGATCATCGCAGAGAGATTCGCTCTTTACACTAGACATATTATCTGCATTCAAAGTCGAGGCGTCGA
CCCGGAGGAAAAGTATCGACGTGACCGGGCGATTGTCTACCTGTTTGTCTATGCTGGTCTGCGGGTGGAAGAGCTGTCGA
ACTTGAAACTGACGGACATTGATCTCGAGATGAGGCGTCTTCGCATCGTGGGCAAAGGGATGAAGGTACGGACGGTGCCG
ATTTCAAACATCTTGTTGGCGGAGCTTCAGGATTGGCTGGCGTTTCGGGCGGAAATGGCGAAAAAGAAACCGCATGTCGA
AGCCTCTCCCTATGTTTTTTATAGCCAGCGATCTCCTAAGTTCTCTGTGCGTGGGATTCAGCGCATGGTCGAGAGCTACA
GCCCGCCGGGCAAGAAACTGACGCCGCATATGTTTCGCCACACCTTCTGCAAGTGGATGTTAAAAGCAACGAACAATGAT
ATCGAAAAGGTGCGCCGGTTGGCCGGTCACAGCCATATCGCCACCACATCGCGGTACGTAAAGGACAGCTACAGTGATTT
GGCGGATGCGGTGGAGGCGTTATCGAAGTTCTAA

Upstream 100 bases:

>100_bases
AGCATATGTCCTGGGTAACAGGATACTCCAGTATATGCCCTGGGTCATAAGATGGGCTAGGTAAATGCCCAGTTTTTGCA
TCTAAAGCAGGAGATCACAT

Downstream 100 bases:

>100_bases
TCAAGTTTGTTGTGCGATTTTCTACTTGTGAGCCTATCTGTGTAGTCTTAGTATCTGTTGGTTGCTATTTTGGAGCAAAG
GCAATTTGTGCTTTAGTATA

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MLEHEIIAERFALYTRHIICIQSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEMRRLRIVGKGMKVRTVP
ISNILLAELQDWLAFRAEMAKKKPHVEASPYVFYSQRSPKFSVRGIQRMVESYSPPGKKLTPHMFRHTFCKWMLKATNND
IEKVRRLAGHSHIATTSRYVKDSYSDLADAVEALSKF

Sequences:

>Translated_197_residues
MLEHEIIAERFALYTRHIICIQSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEMRRLRIVGKGMKVRTVP
ISNILLAELQDWLAFRAEMAKKKPHVEASPYVFYSQRSPKFSVRGIQRMVESYSPPGKKLTPHMFRHTFCKWMLKATNND
IEKVRRLAGHSHIATTSRYVKDSYSDLADAVEALSKF
>Mature_197_residues
MLEHEIIAERFALYTRHIICIQSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEMRRLRIVGKGMKVRTVP
ISNILLAELQDWLAFRAEMAKKKPHVEASPYVFYSQRSPKFSVRGIQRMVESYSPPGKKLTPHMFRHTFCKWMLKATNND
IEKVRRLAGHSHIATTSRYVKDSYSDLADAVEALSKF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=163, Percent_Identity=29.4478527607362, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789261, Length=151, Percent_Identity=29.8013245033113, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22990; Mature: 22990

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEHEIIAERFALYTRHIICIQSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDI
CCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHEEEEHHHCCCHHHHCCCEEEEH
DLEMRRLRIVGKGMKVRTVPISNILLAELQDWLAFRAEMAKKKPHVEASPYVFYSQRSPK
HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
FSVRGIQRMVESYSPPGKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSRYV
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
KDSYSDLADAVEALSKF
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEHEIIAERFALYTRHIICIQSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDI
CCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHEEEEHHHCCCHHHHCCCEEEEH
DLEMRRLRIVGKGMKVRTVPISNILLAELQDWLAFRAEMAKKKPHVEASPYVFYSQRSPK
HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
FSVRGIQRMVESYSPPGKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSRYV
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
KDSYSDLADAVEALSKF
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA