Click here to switch to the map view.

The map label for this gene is ybbI [C]

Identifier: 138895254

GI number: 138895254

Start: 1683436

End: 1684212

Strand: Direct

Name: ybbI [C]

Synonym: GTNG_1596

Alternate gene names: 138895254

Gene position: 1683436-1684212 (Clockwise)

Preceding gene: 138895253

Following gene: 138895255

Centisome position: 47.42

GC content: 35.52

Gene sequence:

>777_bases
ATGAGTGAGTTCATGACGATACAAACTTTTTCCAAAAGGACTGGTATTTCAAAAAGCGCTTTGAGATATTATGAGTCAGA
GAATTTACTGCATCCAATCAGAAGTAAAAATGGTTACCGTCTTTATTCCAAAGACCAGATAGCAACTGTAAAATTGATTT
CAAGTTTACGTTTAGCCGGTGTACCAATAAAGGATATTCGAATGTATTTAAAAGAAAACGAATCAGTCCGTCAACAAATG
ATAAAAAATTGGATTAAGACTTTAAAGGAAAAACATCAGCTTATAAGCGTAAGTTTACGTTTTTTAGAAAGTTACCAAGA
AAGTGGCCAAGTTTACCTGCTAGAAAGAAATGCCGAGAAAATTGTTTGGTTTGTTGCCGAATCGAATCCCGGTAAATTTG
GGAATCATTTTAGACAAAGAAAAAGAGAATTGGAGCGCTTGAACATTCCCATTAATAATGGTTATTTAAGGTATTTATCA
GGCAAGGAATCCATTAAAGCGCAAATTGGATTTGGTGTATCCGACGATGTAGAAATAGAGGGGCTATCCGAAATAGACTC
TATTGAGATAATGCCTCCATGTCTATGTATAGCATTACCGTACACTTCTCCCGTGACAGAAATACAAAAAGGATATGCAC
AATTAATGAATTATACAATGGAACATGGCTTGATTCCCGCAGGTCCAATTATTGAGTGGTATCGAGGAGAGAATTTTGAA
GATTTGGATTTATTAATGCCTGTTGCGCGCATTTCAAATATGGAAGGGAGAAGTTAA

Upstream 100 bases:

>100_bases
AGGCTTGCCTTGAGGACAAGTCTTTTTTTTAATTTTAAAATTTTTCTTGACTTTAAAGTTACTTTAAGGTGTAACTTTGA
TTATAAAGGATGTGAATAAG

Downstream 100 bases:

>100_bases
AGTGAGCAAAAGCGAAGAGTTAGTTATACAGGTAATTGAGTTGAAAGGCAGTTATTATCAAATAGGGTTTGAGCAAGGGC
GTCAATTAAAAGCTAAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSEFMTIQTFSKRTGISKSALRYYESENLLHPIRSKNGYRLYSKDQIATVKLISSLRLAGVPIKDIRMYLKENESVRQQM
IKNWIKTLKEKHQLISVSLRFLESYQESGQVYLLERNAEKIVWFVAESNPGKFGNHFRQRKRELERLNIPINNGYLRYLS
GKESIKAQIGFGVSDDVEIEGLSEIDSIEIMPPCLCIALPYTSPVTEIQKGYAQLMNYTMEHGLIPAGPIIEWYRGENFE
DLDLLMPVARISNMEGRS

Sequences:

>Translated_258_residues
MSEFMTIQTFSKRTGISKSALRYYESENLLHPIRSKNGYRLYSKDQIATVKLISSLRLAGVPIKDIRMYLKENESVRQQM
IKNWIKTLKEKHQLISVSLRFLESYQESGQVYLLERNAEKIVWFVAESNPGKFGNHFRQRKRELERLNIPINNGYLRYLS
GKESIKAQIGFGVSDDVEIEGLSEIDSIEIMPPCLCIALPYTSPVTEIQKGYAQLMNYTMEHGLIPAGPIIEWYRGENFE
DLDLLMPVARISNMEGRS
>Mature_257_residues
SEFMTIQTFSKRTGISKSALRYYESENLLHPIRSKNGYRLYSKDQIATVKLISSLRLAGVPIKDIRMYLKENESVRQQMI
KNWIKTLKEKHQLISVSLRFLESYQESGQVYLLERNAEKIVWFVAESNPGKFGNHFRQRKRELERLNIPINNGYLRYLSG
KESIKAQIGFGVSDDVEIEGLSEIDSIEIMPPCLCIALPYTSPVTEIQKGYAQLMNYTMEHGLIPAGPIIEWYRGENFED
LDLLMPVARISNMEGRS

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29808; Mature: 29677

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFMTIQTFSKRTGISKSALRYYESENLLHPIRSKNGYRLYSKDQIATVKLISSLRLAG
CCCCEEEEHHHHHCCCCHHHHHHHHCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
VPIKDIRMYLKENESVRQQMIKNWIKTLKEKHQLISVSLRFLESYQESGQVYLLERNAEK
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE
IVWFVAESNPGKFGNHFRQRKRELERLNIPINNGYLRYLSGKESIKAQIGFGVSDDVEIE
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHEEECCCCCCCCCCC
GLSEIDSIEIMPPCLCIALPYTSPVTEIQKGYAQLMNYTMEHGLIPAGPIIEWYRGENFE
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
DLDLLMPVARISNMEGRS
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SEFMTIQTFSKRTGISKSALRYYESENLLHPIRSKNGYRLYSKDQIATVKLISSLRLAG
CCCEEEEHHHHHCCCCHHHHHHHHCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
VPIKDIRMYLKENESVRQQMIKNWIKTLKEKHQLISVSLRFLESYQESGQVYLLERNAEK
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE
IVWFVAESNPGKFGNHFRQRKRELERLNIPINNGYLRYLSGKESIKAQIGFGVSDDVEIE
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHEEECCCCCCCCCCC
GLSEIDSIEIMPPCLCIALPYTSPVTEIQKGYAQLMNYTMEHGLIPAGPIIEWYRGENFE
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
DLDLLMPVARISNMEGRS
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA