BacMap

Definition	Geobacillus thermodenitrificans NG80-2 chromosome, complete genome.
Accession	NC_009328
Length	3,550,319

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The map label for this gene is ytrB [H]

Identifier: 138895130

GI number: 138895130

Start: 1550198

End: 1551079

Strand: Direct

Name: ytrB [H]

Synonym: GTNG_1468

Alternate gene names: 138895130

Gene position: 1550198-1551079 (Clockwise)

Preceding gene: 138895129

Following gene: 138895131

Centisome position: 43.66

GC content: 50.57

Gene sequence:

>882_bases
ATGATTCAACTCGTAGACGTGACGAAAACGTTTGATCGGTTTCCCGCTGTCAACGGTGCAACGATGACCGTGCCGAAAGG
GGTGATTTATGGGCTGCTCGGACCGAACGGAGCGGGAAAAACAACGTTGCTGAAGCTAATGGCTGGCATTCTCCGCCAAG
ATCGAGGGACGATCGTGATCGATGGAGAAGAGGTATGGGAAAATACCAACGTGAAGCAACGCCTTTTATTTTTGCCGGAC
TTCGTATATTTTTTTCCGCATACGACGATTCGGCAAATGGCGGACTTTTACGAACAAGTGTATCCGTCATTCAGCCGCGA
GCGGTTTGTGGAGCTGCAGGAGGCGTTTTCGTTGGATCTTGATAAAAAAATTCAGCAGTTTTCCAAAGGAATGCAGCGTC
AAGCCGCGTTTTGGCTCGCCTTTTCCGTTCAACCCGATGTGCTCATTATGGATGAGCCGCTCGATGGGCTCGATGCGTTC
GTTCGTCGCCATGTGAAACAATTGTTGATTGATGAAGTGGTGGAACGGGAAATGACGATTGTCATCTCGTCACATAATTT
GCGCGAGCTCGAAGATTTATGTGGCATTGTTGGGTTGATGGAGCGCGGCACGGTGCGGTTAGAACGAGATTTGGATGAAC
TGCGCGCCGGCATGCATAAGTTGCAGCTCGCTTTTCGCGATGGCTTTCCGAGTGAATTGGTGGAACGCCTCGATATTGTG
CATCGCGAGGAACGAGGAAGCATCGTCCTGCTTGTCGTCCGTGGGGAAAAGCGGCGCATAGAGGAGACGGTTCGCGCGTT
TCATCCTCTCATCCTTGATGTGTTGCCGCTATCACTTGAGGAAATTTTTATGTATGAAATAGGGAGGGGCGCTCATGTCT
AG

Upstream 100 bases:

>100_bases
GAACAGTTCATCCGCCTCGTCAAGGAAGCGCGTTTTTTAGGAGTGACAAACGAGCAGTTATGGCAATGGATCATAGAAGG
GGAGGAAGAGGAGGAGAACA

Downstream 100 bases:

>100_bases
GAAACGGTGGTCGGCGAACCGCGCCATGTGGACGCAAAATATTCGCCAAATAGGTTGGATTGCGATCCTTCATTTGCTGC
TATGGCTGGCGGCGATCGTG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MIQLVDVTKTFDRFPAVNGATMTVPKGVIYGLLGPNGAGKTTLLKLMAGILRQDRGTIVIDGEEVWENTNVKQRLLFLPD
FVYFFPHTTIRQMADFYEQVYPSFSRERFVELQEAFSLDLDKKIQQFSKGMQRQAAFWLAFSVQPDVLIMDEPLDGLDAF
VRRHVKQLLIDEVVEREMTIVISSHNLRELEDLCGIVGLMERGTVRLERDLDELRAGMHKLQLAFRDGFPSELVERLDIV
HREERGSIVLLVVRGEKRRIEETVRAFHPLILDVLPLSLEEIFMYEIGRGAHV

Sequences:

>Translated_293_residues
MIQLVDVTKTFDRFPAVNGATMTVPKGVIYGLLGPNGAGKTTLLKLMAGILRQDRGTIVIDGEEVWENTNVKQRLLFLPD
FVYFFPHTTIRQMADFYEQVYPSFSRERFVELQEAFSLDLDKKIQQFSKGMQRQAAFWLAFSVQPDVLIMDEPLDGLDAF
VRRHVKQLLIDEVVEREMTIVISSHNLRELEDLCGIVGLMERGTVRLERDLDELRAGMHKLQLAFRDGFPSELVERLDIV
HREERGSIVLLVVRGEKRRIEETVRAFHPLILDVLPLSLEEIFMYEIGRGAHV
>Mature_293_residues
MIQLVDVTKTFDRFPAVNGATMTVPKGVIYGLLGPNGAGKTTLLKLMAGILRQDRGTIVIDGEEVWENTNVKQRLLFLPD
FVYFFPHTTIRQMADFYEQVYPSFSRERFVELQEAFSLDLDKKIQQFSKGMQRQAAFWLAFSVQPDVLIMDEPLDGLDAF
VRRHVKQLLIDEVVEREMTIVISSHNLRELEDLCGIVGLMERGTVRLERDLDELRAGMHKLQLAFRDGFPSELVERLDIV
HREERGSIVLLVVRGEKRRIEETVRAFHPLILDVLPLSLEEIFMYEIGRGAHV

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=212, Percent_Identity=27.8301886792453, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI27436953, Length=271, Percent_Identity=26.5682656826568, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI105990541, Length=240, Percent_Identity=30, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI27881501, Length=234, Percent_Identity=25.6410256410256, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI30795238, Length=234, Percent_Identity=25.6410256410256, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI27262624, Length=227, Percent_Identity=25.5506607929515, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI27262626, Length=227, Percent_Identity=25.5506607929515, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI21536376, Length=196, Percent_Identity=31.1224489795918, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=29.9065420560748, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI47078218, Length=226, Percent_Identity=28.3185840707965, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI45446740, Length=226, Percent_Identity=28.3185840707965, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI31657092, Length=214, Percent_Identity=26.6355140186916, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI27477115, Length=210, Percent_Identity=26.1904761904762, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI6005701, Length=268, Percent_Identity=24.6268656716418, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI150417984, Length=196, Percent_Identity=29.0816326530612, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI87081782, Length=222, Percent_Identity=30.6306306306306, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081709, Length=209, Percent_Identity=29.1866028708134, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI48994943, Length=232, Percent_Identity=28.8793103448276, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788761, Length=213, Percent_Identity=28.169014084507, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1786319, Length=240, Percent_Identity=27.5, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87081791, Length=209, Percent_Identity=27.7511961722488, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=26.7857142857143, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788450, Length=216, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=28.0542986425339, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789032, Length=201, Percent_Identity=24.3781094527363, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787758, Length=231, Percent_Identity=25.1082251082251, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI48995001, Length=224, Percent_Identity=28.125, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=25.4545454545455, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=25.7731958762887, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=28.4313725490196, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789672, Length=233, Percent_Identity=25.3218884120172, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787712, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788472, Length=219, Percent_Identity=26.9406392694064, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082268, Length=227, Percent_Identity=27.3127753303965, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=25.7777777777778, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787792, Length=225, Percent_Identity=27.5555555555556, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787759, Length=274, Percent_Identity=25.9124087591241, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786345, Length=186, Percent_Identity=26.8817204301075, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787143, Length=233, Percent_Identity=27.0386266094421, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790467, Length=167, Percent_Identity=26.9461077844311, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=25.8064516129032, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082267, Length=167, Percent_Identity=27.5449101796407, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787500, Length=189, Percent_Identity=24.3386243386243, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788165, Length=194, Percent_Identity=24.7422680412371, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787041, Length=240, Percent_Identity=23.75, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789962, Length=211, Percent_Identity=25.5924170616114, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI48994997, Length=211, Percent_Identity=25.5924170616114, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=238, Percent_Identity=27.7310924369748, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71983510, Length=238, Percent_Identity=27.7310924369748, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71983516, Length=238, Percent_Identity=27.7310924369748, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17510237, Length=210, Percent_Identity=28.0952380952381, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI115533608, Length=201, Percent_Identity=26.3681592039801, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=214, Percent_Identity=25.7009345794392, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17533971, Length=242, Percent_Identity=24.3801652892562, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582014, Length=235, Percent_Identity=29.3617021276596, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24582012, Length=235, Percent_Identity=29.3617021276596, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24643674, Length=220, Percent_Identity=28.6363636363636, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24650853, Length=193, Percent_Identity=31.0880829015544, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24650855, Length=193, Percent_Identity=31.0880829015544, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI281362751, Length=193, Percent_Identity=31.0880829015544, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24666092, Length=196, Percent_Identity=32.1428571428571, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28574150, Length=213, Percent_Identity=27.2300469483568, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007328, Length=213, Percent_Identity=27.2300469483568, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI85725262, Length=207, Percent_Identity=30.9178743961353, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221512771, Length=205, Percent_Identity=28.2926829268293, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007184, Length=227, Percent_Identity=27.3127753303965, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI221500365, Length=227, Percent_Identity=27.3127753303965, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28573571, Length=218, Percent_Identity=25.2293577981651, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI28573573, Length=218, Percent_Identity=25.2293577981651, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24648314, Length=220, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33715; Mature: 33715

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLVDVTKTFDRFPAVNGATMTVPKGVIYGLLGPNGAGKTTLLKLMAGILRQDRGTIVI
CEEEEEHHHHHHHCCCCCCCEEEECCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
DGEEVWENTNVKQRLLFLPDFVYFFPHTTIRQMADFYEQVYPSFSRERFVELQEAFSLDL
CCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH
DKKIQQFSKGMQRQAAFWLAFSVQPDVLIMDEPLDGLDAFVRRHVKQLLIDEVVEREMTI
HHHHHHHHHHHHHHHHEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEE
VISSHNLRELEDLCGIVGLMERGTVRLERDLDELRAGMHKLQLAFRDGFPSELVERLDIV
EEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
HREERGSIVLLVVRGEKRRIEETVRAFHPLILDVLPLSLEEIFMYEIGRGAHV
HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIQLVDVTKTFDRFPAVNGATMTVPKGVIYGLLGPNGAGKTTLLKLMAGILRQDRGTIVI
CEEEEEHHHHHHHCCCCCCCEEEECCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
DGEEVWENTNVKQRLLFLPDFVYFFPHTTIRQMADFYEQVYPSFSRERFVELQEAFSLDL
CCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCH
DKKIQQFSKGMQRQAAFWLAFSVQPDVLIMDEPLDGLDAFVRRHVKQLLIDEVVEREMTI
HHHHHHHHHHHHHHHHEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEE
VISSHNLRELEDLCGIVGLMERGTVRLERDLDELRAGMHKLQLAFRDGFPSELVERLDIV
EEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
HREERGSIVLLVVRGEKRRIEETVRAFHPLILDVLPLSLEEIFMYEIGRGAHV
HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]