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The map label for this gene is ytrA [H]

Identifier: 138895129

GI number: 138895129

Start: 1549807

End: 1550232

Strand: Direct

Name: ytrA [H]

Synonym: GTNG_1467

Alternate gene names: 138895129

Gene position: 1549807-1550232 (Clockwise)

Preceding gene: 138895123

Following gene: 138895130

Centisome position: 43.65

GC content: 50.94

Gene sequence:

>426_bases
ATGAGAGGAGGAGGGGAGATGTTTGAACTCGATGTACGAAGCCGGCAGCCGATTTATGAACAGCTGATCGAAAAAATGAA
AGAAATGATCGTCCGCGAATTATGGCAGCCGCATGATCAGCTGCCGTCGGTCAGGGCGATGGCGAAACAACTGATGGTCA
ACCCGAATACGATTCAAAAAGCGTACCGCGAACTCGAACGCGATGGCTGGATTTATTCTGTTCCAGGGAAGGGGAGTTTT
GTCGCGTCGCGCCCGAAAGAGCCAAACGCCGAGGCGATCGCTGCCGTTCATGAACAGTTCATCCGCCTCGTCAAGGAAGC
GCGTTTTTTAGGAGTGACAAACGAGCAGTTATGGCAATGGATCATAGAAGGGGAGGAAGAGGAGGAGAACAATGATTCAA
CTCGTAGACGTGACGAAAACGTTTGA

Upstream 100 bases:

>100_bases
TATTGTTCGCCGTTGTCAAAATCATAAAAAGACAAATGGAAAAAAATACTTGAATTTCTACTGTTTTAAGTGTACTATTA
GTTATAGTACGGTTGTGACG

Downstream 100 bases:

>100_bases
TCGGTTTCCCGCTGTCAACGGTGCAACGATGACCGTGCCGAAAGGGGTGATTTATGGGCTGCTCGGACCGAACGGAGCGG
GAAAAACAACGTTGCTGAAG

Product: acetoin transport repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRGGGEMFELDVRSRQPIYEQLIEKMKEMIVRELWQPHDQLPSVRAMAKQLMVNPNTIQKAYRELERDGWIYSVPGKGSF
VASRPKEPNAEAIAAVHEQFIRLVKEARFLGVTNEQLWQWIIEGEEEEENNDSTRRRDENV

Sequences:

>Translated_141_residues
MRGGGEMFELDVRSRQPIYEQLIEKMKEMIVRELWQPHDQLPSVRAMAKQLMVNPNTIQKAYRELERDGWIYSVPGKGSF
VASRPKEPNAEAIAAVHEQFIRLVKEARFLGVTNEQLWQWIIEGEEEEENNDSTRRRDENV
>Mature_141_residues
MRGGGEMFELDVRSRQPIYEQLIEKMKEMIVRELWQPHDQLPSVRAMAKQLMVNPNTIQKAYRELERDGWIYSVPGKGSF
VASRPKEPNAEAIAAVHEQFIRLVKEARFLGVTNEQLWQWIIEGEEEEENNDSTRRRDENV

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 16570; Mature: 16570

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGGGEMFELDVRSRQPIYEQLIEKMKEMIVRELWQPHDQLPSVRAMAKQLMVNPNTIQK
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHH
AYRELERDGWIYSVPGKGSFVASRPKEPNAEAIAAVHEQFIRLVKEARFLGVTNEQLWQW
HHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
IIEGEEEEENNDSTRRRDENV
HHCCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MRGGGEMFELDVRSRQPIYEQLIEKMKEMIVRELWQPHDQLPSVRAMAKQLMVNPNTIQK
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHH
AYRELERDGWIYSVPGKGSFVASRPKEPNAEAIAAVHEQFIRLVKEARFLGVTNEQLWQW
HHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
IIEGEEEEENNDSTRRRDENV
HHCCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]