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The map label for this gene is fliR [H]

Identifier: 138894757

GI number: 138894757

Start: 1151264

End: 1152037

Strand: Direct

Name: fliR [H]

Synonym: GTNG_1089

Alternate gene names: 138894757

Gene position: 1151264-1152037 (Clockwise)

Preceding gene: 138894756

Following gene: 138894758

Centisome position: 32.43

GC content: 51.55

Gene sequence:

>774_bases
ATGGAACAATTATGGACTCACTTTCCGGCATTTTTGCTTATCTTTGCCCGCACCGCTTCTTTTTTTGCTGCGATGCCGCT
TTTTTCGTACCGGACGGTGCCGGCTTCATATAAAATCGGGTTGGCGTTTTTTTTCAGTTGGATTTTGTTTTTGGCGGTGC
CCAAACCGACACTGTCATTGAACGATGTGTATATGTTGCTTGTCTTCAAAGAGGTGCTCGTCGGGCTGGCGCTTGGGCTG
CTTGCGGCAACCATTATGGCAGCGGTGCAAATTGCCGGTGGGTTGATTGACTTTCAAATCGGCTTTGCCATCGCCAATGT
CATCGATCCGCAAACCGGGGCGCAAAGCCCGTTGTTAGGCCAGTATCTTCACTCGTTAGCACTCTTGCTTTTGCTGGCGC
TTGACGGACACCATTTGCTGCTTGATGGCATGTTTTACAGCTATCAGTGGCTGCCGCTTGACGGGTGGCCGCATATTGCC
GATGGGCGGGCTGTCGACTATGCTGTTCGCGCCTTCGCCGCGATGTTTGTCGTCGCCGTACAAATGGCTGCCCCGTTTGT
CGGATCGCTCTTTTTAGTCGATGTGGCGCTTGGCATCATCGCTCGTGCAGTGCCGCAAATGAACATTTTTGCCGTTGGTT
TTTCGCTCAAAACGGTGACGGCATTTTTGTTGTTGTTTGCAGCGATCGGAGGAATTTTGTTTTCCGCCCGTGAACTGTTT
CAACTCATGTTTGCGTCGCTGCGCGAGTTTATGCGGTTGTTAGGAGGCGCGTAA

Upstream 100 bases:

>100_bases
GCTCGGGCTTGTGTTGTTCGGGCCGTGGATGCTCTCGAAAATGGTGTCATACGCCCATGATATTTTCAATAATTTGGCTT
CGTTTATAGGCTGATCGATC

Downstream 100 bases:

>100_bases
GATGGGCTGCTGGCGGCTTGATTTGCAATTTTTTGCGGGAGAAAAAACGGAAAAGGCGACGCCGCGCAAACGGCAAGAAG
TGCGGGAAAAAGGGCAGGTG

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MEQLWTHFPAFLLIFARTASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAVPKPTLSLNDVYMLLVFKEVLVGLALGL
LAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGQYLHSLALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIA
DGRAVDYAVRAFAAMFVVAVQMAAPFVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELF
QLMFASLREFMRLLGGA

Sequences:

>Translated_257_residues
MEQLWTHFPAFLLIFARTASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAVPKPTLSLNDVYMLLVFKEVLVGLALGL
LAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGQYLHSLALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIA
DGRAVDYAVRAFAAMFVVAVQMAAPFVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELF
QLMFASLREFMRLLGGA
>Mature_257_residues
MEQLWTHFPAFLLIFARTASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAVPKPTLSLNDVYMLLVFKEVLVGLALGL
LAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLGQYLHSLALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIA
DGRAVDYAVRAFAAMFVVAVQMAAPFVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELF
QLMFASLREFMRLLGGA

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=219, Percent_Identity=31.5068493150685, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28048; Mature: 28048

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLWTHFPAFLLIFARTASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAVPKPTLSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
NDVYMLLVFKEVLVGLALGLLAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHH
QYLHSLALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIADGRAVDYAVRAFAAMFVVAV
HHHHHHHHHHHHHHCCCHHEEHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
QMAAPFVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELF
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLMFASLREFMRLLGGA
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQLWTHFPAFLLIFARTASFFAAMPLFSYRTVPASYKIGLAFFFSWILFLAVPKPTLSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
NDVYMLLVFKEVLVGLALGLLAATIMAAVQIAGGLIDFQIGFAIANVIDPQTGAQSPLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHH
QYLHSLALLLLLALDGHHLLLDGMFYSYQWLPLDGWPHIADGRAVDYAVRAFAAMFVVAV
HHHHHHHHHHHHHHCCCHHEEHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
QMAAPFVGSLFLVDVALGIIARAVPQMNIFAVGFSLKTVTAFLLLFAAIGGILFSARELF
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLMFASLREFMRLLGGA
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]