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The map label for this gene is xerC [H]

Identifier: 138894733

GI number: 138894733

Start: 1132807

End: 1133736

Strand: Direct

Name: xerC [H]

Synonym: GTNG_1065

Alternate gene names: 138894733

Gene position: 1132807-1133736 (Clockwise)

Preceding gene: 138894732

Following gene: 138894734

Centisome position: 31.91

GC content: 50.97

Gene sequence:

>930_bases
ATGAAGGAGCCGTTGCGAGGTGAGGCGATGAAAAATGCGAAACTTGCGTTACAATTGTTCCTGGAATATTTACAAATCGA
GAAAAATTATTCACAATATACTATTGTGTGCTACCGGCGCGACATTGAGCAGTTTCTCCAGTTCATGAACGAAGAAGGGA
TCGATGAGCTCAATGAAGTAGCCTACAGCGACGTTCGCTTATATTTGACGAAACTATACGGACAGCAGCTGGCCAGCCGT
TCGGTCGCCCGTAAAATTTCCAGTTTGCGAAGCTTTTATAAGTTTTTGCTGCGTGAAGGATGGACGGCCGAAAATCCGTT
TGCACTTGCCGCGTTGCCGAAAAAAGAGCAAAAAATTCCCAACTTTTTATATCGTGAGGAATTAGAAGCGCTGTTTCGTG
TCAATGATGGAAATACAGCCGTCGGCCAGCGCAACGCAGCACTTCTTGAGCTGCTGTACGCGACTGGTGCACGGGTTAGT
GAATGCTGTCACATTCGGCTGTCCGATCTTGATTTCGCTGCATCTACCGTGCTCATTCATGGAAAAGGAAATAAGCAGCG
TTATGTTCCGTTTGGCCGTCCGGCTAGGGAGGCGCTTGAACGGTACATCGGTGGCGGACGCCGCGAGCTCGTAGGAAAGC
TGCCGGCAGACCACCGCTATTTGTTTGTCAATGCCCGTGGCAATCCGCTTACGCCTCGGGGAGTGCGCTACATTTTGGAT
CGCATCGTCGAAACGGCGGCGCTGACGCAAAACATCAGCCCGCATGTGCTGCGCCATACGTTTGCGACCCATTTGCTCAA
CGAAGGAGCCGATCTCCGCTCCGTGCAAGAGCTGCTAGGCCATGCGCACTTATCATCAACGCAAGTGTATACCCATGTGA
CGAAAGATCGGCTGCGGTGTATTTATTTGCAGGCGCATCCGCGTGCATAG

Upstream 100 bases:

>100_bases
GGCGTGCGACTATGAGGAACAACCAGAAGCTTGACCACGCATCGGATACAATTCAGAATTTTATAAAAAATAGTTGCGCG
ATGCAGAGTCATATGGTACG

Downstream 100 bases:

>100_bases
CCTGCGGGCAAGGAGGGAAGAACCATGGACGGTTTTCATGCGACGACGATTTTCGCCATCCGTCATAATGGGGCGGCAGC
GATGGCAGGCGATGGCCAAG

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKEPLRGEAMKNAKLALQLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQQLASR
SVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREELEALFRVNDGNTAVGQRNAALLELLYATGARVS
ECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPAREALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILD
RIVETAALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRCIYLQAHPRA

Sequences:

>Translated_309_residues
MKEPLRGEAMKNAKLALQLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQQLASR
SVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREELEALFRVNDGNTAVGQRNAALLELLYATGARVS
ECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPAREALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILD
RIVETAALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRCIYLQAHPRA
>Mature_309_residues
MKEPLRGEAMKNAKLALQLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQQLASR
SVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREELEALFRVNDGNTAVGQRNAALLELLYATGARVS
ECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPAREALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILD
RIVETAALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRCIYLQAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=301, Percent_Identity=37.8737541528239, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1790244, Length=300, Percent_Identity=32.6666666666667, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1790767, Length=199, Percent_Identity=32.1608040201005, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790768, Length=155, Percent_Identity=33.5483870967742, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35408; Mature: 35408

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEPLRGEAMKNAKLALQLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEV
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHH
AYSDVRLYLTKLYGQQLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHCH
NFLYREELEALFRVNDGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIH
HHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHEEEECCCCCEEEEEEEE
GKGNKQRYVPFGRPAREALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILD
CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHH
RIVETAALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRC
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEE
IYLQAHPRA
EEEEECCCC
>Mature Secondary Structure
MKEPLRGEAMKNAKLALQLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEV
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHH
AYSDVRLYLTKLYGQQLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHCH
NFLYREELEALFRVNDGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIH
HHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHEEEECCCCCEEEEEEEE
GKGNKQRYVPFGRPAREALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILD
CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHH
RIVETAALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRC
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEE
IYLQAHPRA
EEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA