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The map label for this gene is yodC [H]

Identifier: 138894545

GI number: 138894545

Start: 948462

End: 949076

Strand: Reverse

Name: yodC [H]

Synonym: GTNG_0875

Alternate gene names: 138894545

Gene position: 949076-948462 (Counterclockwise)

Preceding gene: 138894546

Following gene: 138894540

Centisome position: 26.73

GC content: 54.15

Gene sequence:

>615_bases
ATGAAAGACTTGTTTGCTGTCATTGAGGAACGAAAATCCGTCCGTCAATATGACGCCAACGCGACGATCAGCAAAGATGA
GCTGCGTGCCATTCTCACGGCTGCCGCGAAAGCACCGTCTGCTTGGAATTTGCAGCCATGGCACTTTCTCGTCATCCACG
GCAAAGAGGCACAACGACGGTTGCAACCAATCGCTTATGGCCAACAACAAATCGTTGATGCCTCTGCTGTGATCGTTGTG
CTTGGTGATTTGGAGGCGAACCAGAATACAGATGCCGTTTATGACCCACTCGTTCGCGAAGGGACGATGACCGAAGAGGT
AAAGCAGCAGCTCGCTAAGCAAATTGAGACAGCGTATGCCAACGAGCAATACGCCCGTGACGCTGCGTTTCAAAACACCG
CCTTCGCCGCAATGCAGCTCATGCTGGCGGCAACGGCGAAAGGCTGGGCGACATGTCCGATCGGCGGATTTAACCCCGAA
CGGCTCAAAGAGGAGTTTCACATTTCAAACCGCTATGTGCCGACGTTGCTTATCACGATCGGCAAGGCGGCTGCCCCTGC
CCACCATTCAATCCGGTTGCCCATCGAGACCTTGTCGACGTGGGTGGAGCAATAG

Upstream 100 bases:

>100_bases
ACCGCTCGTAACGACAGCGAGATGGCCGAAAAACAGCGGGACACCCTTGCATACCTCACAAAAAGGGGGAATGATCATGA
CAGTTGGTATGACGCCAATC

Downstream 100 bases:

>100_bases
CAAAGCAGGCGTTCCCACACCATTTGGGAACGCCTGTTTCTAGGATGTCATCTTCTGCTAGTCATTCGCGTCTACAAACG
CACACCCGGACGGAAACGTC

Product: NAD(P)H nitroreductase

Products: NAD(P)(+); @TETR01.txt*5,6,7,8-Tetrahydropteridine!. [C]

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKDLFAVIEERKSVRQYDANATISKDELRAILTAAAKAPSAWNLQPWHFLVIHGKEAQRRLQPIAYGQQQIVDASAVIVV
LGDLEANQNTDAVYDPLVREGTMTEEVKQQLAKQIETAYANEQYARDAAFQNTAFAAMQLMLAATAKGWATCPIGGFNPE
RLKEEFHISNRYVPTLLITIGKAAAPAHHSIRLPIETLSTWVEQ

Sequences:

>Translated_204_residues
MKDLFAVIEERKSVRQYDANATISKDELRAILTAAAKAPSAWNLQPWHFLVIHGKEAQRRLQPIAYGQQQIVDASAVIVV
LGDLEANQNTDAVYDPLVREGTMTEEVKQQLAKQIETAYANEQYARDAAFQNTAFAAMQLMLAATAKGWATCPIGGFNPE
RLKEEFHISNRYVPTLLITIGKAAAPAHHSIRLPIETLSTWVEQ
>Mature_204_residues
MKDLFAVIEERKSVRQYDANATISKDELRAILTAAAKAPSAWNLQPWHFLVIHGKEAQRRLQPIAYGQQQIVDASAVIVV
LGDLEANQNTDAVYDPLVREGTMTEEVKQQLAKQIETAYANEQYARDAAFQNTAFAAMQLMLAATAKGWATCPIGGFNPE
RLKEEFHISNRYVPTLLITIGKAAAPAHHSIRLPIETLSTWVEQ

Specific function: Putative nitroreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 22701; Mature: 22701

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLFAVIEERKSVRQYDANATISKDELRAILTAAAKAPSAWNLQPWHFLVIHGKEAQRR
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHH
LQPIAYGQQQIVDASAVIVVLGDLEANQNTDAVYDPLVREGTMTEEVKQQLAKQIETAYA
HHHHHCCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
NEQYARDAAFQNTAFAAMQLMLAATAKGWATCPIGGFNPERLKEEFHISNRYVPTLLITI
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCHHHHEEEC
GKAAAPAHHSIRLPIETLSTWVEQ
CCCCCCCCCEEECCHHHHHHHHCC
>Mature Secondary Structure
MKDLFAVIEERKSVRQYDANATISKDELRAILTAAAKAPSAWNLQPWHFLVIHGKEAQRR
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHH
LQPIAYGQQQIVDASAVIVVLGDLEANQNTDAVYDPLVREGTMTEEVKQQLAKQIETAYA
HHHHHCCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
NEQYARDAAFQNTAFAAMQLMLAATAKGWATCPIGGFNPERLKEEFHISNRYVPTLLITI
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCHHHHEEEC
GKAAAPAHHSIRLPIETLSTWVEQ
CCCCCCCCCEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: FMN. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NAD(P)H; 6,7-Dihydropteridine [C]

Specific reaction: NAD(P)H + 6,7-Dihydropteridine = NAD(P)(+) + @TETR01.txt*5,6,7,8-Tetrahydropteridine!. [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]