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The map label for this gene is yndE [H]

Identifier: 138894532

GI number: 138894532

Start: 939119

End: 940231

Strand: Direct

Name: yndE [H]

Synonym: GTNG_0862

Alternate gene names: 138894532

Gene position: 939119-940231 (Clockwise)

Preceding gene: 138894531

Following gene: 138894533

Centisome position: 26.45

GC content: 45.1

Gene sequence:

>1113_bases
ATGAAACAAACGCTCGATGAACGATTTCTCATCTCCCCGTTTCTTGTTTTTTTTATCGTTCATGCAACCCAAGTCGGTGT
CGGGATGCTTGGTTTTCAGCGGCCACTAATGGAAGATGCGGGGCAAGATGCTTGGATGGCTGTATTATTGGCTGGATTGG
CTACGCACGTGCTCATTTGGCTGATGTATCGTCTGCTTGCCTATTCCCCATCCGGCGGCGATATTGTATCGCTTCATAAG
CATTATTTCGGGCGTTGGTTCGGCGGGGTGTTAAGCATCGGTTTGTTGGCTTATTACGCCCTAGCAGCGTTTACGGTGCT
TCAATCATATATTGAAATTATTAAAGTATGGATGTTCCCGCTGATGGGCGCATGGCAGTTCAGCCTCATTTTTTTAATGT
TGACGTATTACGTCATTTCCGGCGGTTTTCGTGTCGTCGCTGGCCTATGCTTTTGGGGAGTTGTCATCCCGCTGGCGACG
ATATTTCCGATGATGGCTTTTGCGTTCGAATATGCACAATATCGGAACTTATTGCCGGTGTTGGACCATTCGCCCACACA
AATCTTAAAAGCTGTCAACGATATGGCGTTTCAATATTTAGGGTTTGAAGTGCTGCTTATGTATTACCCATTTTTAAAAA
ATGCCCCGTCATCGCAAAAGTGGGCGCATGCTTCCAACGTATTGACAATATTCCTTTATTTGGTCGTCATACTTATCTCC
ATCATTTTTTACAACAAAGAACAGATCGCTCATATTACATGGCCGACGTTGACGCTTGCCAAAATTCCGGAAGTGCCATT
TATTGAACGGATGGAATATATCGTCATTTCGATTTATGTGCTTGTGGTGTTTCCGAACCTTGTCGTCGCTGTTTGGGCGA
TGGCGCGCGTGGTCAAACAGCTGTTTTCCATCAGACAGCGCCGGTCATTGCCGGTGTTGATCGCCTGCTTGTTTATCGGG
ACGTTGTTTTTTGAAGAGAAAAGCGATATCGAACGGTTCATACAATGGACGTCTAAAAGCGGGCTTTTCCTCATAGGGGT
TTATATTCCACTTCTGTACGTGTATGTATGGGTAGTGGAAAAAGTGAAAAAATCTCTACAACAAAAGCAGTAG

Upstream 100 bases:

>100_bases
ATCGTGAATATCCAGATTTAGATATTCGTCCACACGTGACGGTGGACATTATCCATACAGGAATTGGTGAATAAAACGGG
GATCATGAGGAGGGATAACG

Downstream 100 bases:

>100_bases
TTATGTTATAGTAAAAAAGGAAACAGAAGAATACAATTCCGTACGCTCGTACGGGAGAGGTTTCTAGCAAAACCCTCTAT
AAAAAACTAGGGACGGCTGT

Product: GerB family spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MKQTLDERFLISPFLVFFIVHATQVGVGMLGFQRPLMEDAGQDAWMAVLLAGLATHVLIWLMYRLLAYSPSGGDIVSLHK
HYFGRWFGGVLSIGLLAYYALAAFTVLQSYIEIIKVWMFPLMGAWQFSLIFLMLTYYVISGGFRVVAGLCFWGVVIPLAT
IFPMMAFAFEYAQYRNLLPVLDHSPTQILKAVNDMAFQYLGFEVLLMYYPFLKNAPSSQKWAHASNVLTIFLYLVVILIS
IIFYNKEQIAHITWPTLTLAKIPEVPFIERMEYIVISIYVLVVFPNLVVAVWAMARVVKQLFSIRQRRSLPVLIACLFIG
TLFFEEKSDIERFIQWTSKSGLFLIGVYIPLLYVYVWVVEKVKKSLQQKQ

Sequences:

>Translated_370_residues
MKQTLDERFLISPFLVFFIVHATQVGVGMLGFQRPLMEDAGQDAWMAVLLAGLATHVLIWLMYRLLAYSPSGGDIVSLHK
HYFGRWFGGVLSIGLLAYYALAAFTVLQSYIEIIKVWMFPLMGAWQFSLIFLMLTYYVISGGFRVVAGLCFWGVVIPLAT
IFPMMAFAFEYAQYRNLLPVLDHSPTQILKAVNDMAFQYLGFEVLLMYYPFLKNAPSSQKWAHASNVLTIFLYLVVILIS
IIFYNKEQIAHITWPTLTLAKIPEVPFIERMEYIVISIYVLVVFPNLVVAVWAMARVVKQLFSIRQRRSLPVLIACLFIG
TLFFEEKSDIERFIQWTSKSGLFLIGVYIPLLYVYVWVVEKVKKSLQQKQ
>Mature_370_residues
MKQTLDERFLISPFLVFFIVHATQVGVGMLGFQRPLMEDAGQDAWMAVLLAGLATHVLIWLMYRLLAYSPSGGDIVSLHK
HYFGRWFGGVLSIGLLAYYALAAFTVLQSYIEIIKVWMFPLMGAWQFSLIFLMLTYYVISGGFRVVAGLCFWGVVIPLAT
IFPMMAFAFEYAQYRNLLPVLDHSPTQILKAVNDMAFQYLGFEVLLMYYPFLKNAPSSQKWAHASNVLTIFLYLVVILIS
IIFYNKEQIAHITWPTLTLAKIPEVPFIERMEYIVISIYVLVVFPNLVVAVWAMARVVKQLFSIRQRRSLPVLIACLFIG
TLFFEEKSDIERFIQWTSKSGLFLIGVYIPLLYVYVWVVEKVKKSLQQKQ

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 42533; Mature: 42533

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCC
>Mature Secondary Structure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HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]