Click here to switch to the map view.

The map label for this gene is gerIA [H]

Identifier: 138894530

GI number: 138894530

Start: 936534

End: 937994

Strand: Direct

Name: gerIA [H]

Synonym: GTNG_0860

Alternate gene names: 138894530

Gene position: 936534-937994 (Clockwise)

Preceding gene: 138894529

Following gene: 138894531

Centisome position: 26.38

GC content: 50.44

Gene sequence:

>1461_bases
ATGCCGCAATTATGGGAAAAGCTCCGGCGATCCAGTGATTTTGTCGAAGTGTCGTTTGTGGTTGGACGCAAGGAGCTATC
GGTTTACTATTTTGATTCGCTCGTAGACCCGAAAGTGCTGCAGGAAAATATTCTTTGTCATCTGCAAAATGATCTTTCTC
GCCGTCCGGATGTTCAGTTGGAAGATTTACAGCAAATCGTTCCGATTCAACGCATTGAAGTGAGCGAGGATCCGGCGGCG
ATCGAGGAAAAAGTACTGAAAGGGTTTGTTGTCGTCAGCTTTCGAGAACAGCCGGGCAAGGCGGCGCTCATCAGTGCGGC
GAACGAAAATCTAGGGCTGCGGGAAAACAACGATACGGAAAACGAATTTAGCGTCGTCGGACCGAAAGTCGGGTTTGTCG
AAAATATCGGCACGAACTTGCATCTTCTCCGCCGACAAATCGTAACGCCGAATCTTGTGTTTCGTGAAATGATGATCGGC
TCGGTGTCAAAAACGAAAGTTGTGATTGCCTATATTGACGGCGTGGCGAACCCGGAAACGATCCGAACGATGACACAGCG
AATTGAAGCCATTGATTTTGACGTTGTGTTTGATAATGCGATCATCGATCAGATCATCGCCGATAATTCAAAGACGCCAT
TTCCGCTCTTCCTCTCCACCGAGCGAATCGACCGAGCTGTTTATGCGCTCGTATCAGGACAAGTCGCGGTGTTTTGCGAC
GGTTCACCGTATGCGATCATCGGCCCGTCCACGTTTTTTGATTTCTTTACTTCGCCGGAAGACTATTCTTTGCCGTGGGT
GCTCGGCTCATTTTTCCGGCTTATCCGCTTTTTCGGTGTTATGTTTTCCATCTTGGCATCACCGGTTTATATCGCGGTAT
TGACGTACCATTATGAAATGATTCCGGAAGACTTGCTTGGTCCGATCATTTATTCGCGCTCGAACGTTCCGTTTCCGCCA
GTGCTTGAAGTATTGTTTTTGGAGATTACGATTGAGCTGCTGCGCGAGGCAGGGGCGCGTCTGCCGACGAAAGTCGCACA
GACGCTCGGTATCGTCGGCGGGATTGTTATCGGGCAGGCGACGGTGGATGCCGGGCTGGCGAGCACGATTTTGCTCATTG
TCGTCGCTTTAGCGGCGCTCGCCTCGTTTACGACGCCAATTTTTAAAATGTCAAATTCGATTCGGTTTATCCGATTCCCG
TTTATTTTGTTTGCCGCATGTTGGGGAGGGATCGGAATCGCCTTCGCCGTCTGCGGACTGCTTATTCATTTAGGTCGGCT
TCAGTCGCTTGGTTATCCATACTTAGTGCCGTTTTATCCGTTGCGCGTGCGCAACTTCCGCGATACGTTCGTCCGCTCGC
CATACAGTATGACAGCGGAGCGGCCGACGTTTTTCCGCCCGCAGTCGCGGTTTCGCTATGACCCGGAAAATGCTAAGCAA
AAGCGCGATATTGATGAGTAA

Upstream 100 bases:

>100_bases
TTCTCACATTGGAAGACTATGCCGTAAACGGAAAGGCGAGGGGATAGCCGTGAGCTTTTTATCATTTTTCAAAAAGAAAA
AGCATCCGTCACAGCTAACA

Downstream 100 bases:

>100_bases
GGTGTGATGGGGATGAAACGTTGGCTCGCATGTTTGCTAGGGTTGCTGTTGCTTGGCGGCTGTGCGAAATCGCGGCCGAT
CGATCAAATTCAAATTATCC

Product: GerA family spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MPQLWEKLRRSSDFVEVSFVVGRKELSVYYFDSLVDPKVLQENILCHLQNDLSRRPDVQLEDLQQIVPIQRIEVSEDPAA
IEEKVLKGFVVVSFREQPGKAALISAANENLGLRENNDTENEFSVVGPKVGFVENIGTNLHLLRRQIVTPNLVFREMMIG
SVSKTKVVIAYIDGVANPETIRTMTQRIEAIDFDVVFDNAIIDQIIADNSKTPFPLFLSTERIDRAVYALVSGQVAVFCD
GSPYAIIGPSTFFDFFTSPEDYSLPWVLGSFFRLIRFFGVMFSILASPVYIAVLTYHYEMIPEDLLGPIIYSRSNVPFPP
VLEVLFLEITIELLREAGARLPTKVAQTLGIVGGIVIGQATVDAGLASTILLIVVALAALASFTTPIFKMSNSIRFIRFP
FILFAACWGGIGIAFAVCGLLIHLGRLQSLGYPYLVPFYPLRVRNFRDTFVRSPYSMTAERPTFFRPQSRFRYDPENAKQ
KRDIDE

Sequences:

>Translated_486_residues
MPQLWEKLRRSSDFVEVSFVVGRKELSVYYFDSLVDPKVLQENILCHLQNDLSRRPDVQLEDLQQIVPIQRIEVSEDPAA
IEEKVLKGFVVVSFREQPGKAALISAANENLGLRENNDTENEFSVVGPKVGFVENIGTNLHLLRRQIVTPNLVFREMMIG
SVSKTKVVIAYIDGVANPETIRTMTQRIEAIDFDVVFDNAIIDQIIADNSKTPFPLFLSTERIDRAVYALVSGQVAVFCD
GSPYAIIGPSTFFDFFTSPEDYSLPWVLGSFFRLIRFFGVMFSILASPVYIAVLTYHYEMIPEDLLGPIIYSRSNVPFPP
VLEVLFLEITIELLREAGARLPTKVAQTLGIVGGIVIGQATVDAGLASTILLIVVALAALASFTTPIFKMSNSIRFIRFP
FILFAACWGGIGIAFAVCGLLIHLGRLQSLGYPYLVPFYPLRVRNFRDTFVRSPYSMTAERPTFFRPQSRFRYDPENAKQ
KRDIDE
>Mature_485_residues
PQLWEKLRRSSDFVEVSFVVGRKELSVYYFDSLVDPKVLQENILCHLQNDLSRRPDVQLEDLQQIVPIQRIEVSEDPAAI
EEKVLKGFVVVSFREQPGKAALISAANENLGLRENNDTENEFSVVGPKVGFVENIGTNLHLLRRQIVTPNLVFREMMIGS
VSKTKVVIAYIDGVANPETIRTMTQRIEAIDFDVVFDNAIIDQIIADNSKTPFPLFLSTERIDRAVYALVSGQVAVFCDG
SPYAIIGPSTFFDFFTSPEDYSLPWVLGSFFRLIRFFGVMFSILASPVYIAVLTYHYEMIPEDLLGPIIYSRSNVPFPPV
LEVLFLEITIELLREAGARLPTKVAQTLGIVGGIVIGQATVDAGLASTILLIVVALAALASFTTPIFKMSNSIRFIRFPF
ILFAACWGGIGIAFAVCGLLIHLGRLQSLGYPYLVPFYPLRVRNFRDTFVRSPYSMTAERPTFFRPQSRFRYDPENAKQK
RDIDE

Specific function: Required for inosine germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 54649; Mature: 54518

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQLWEKLRRSSDFVEVSFVVGRKELSVYYFDSLVDPKVLQENILCHLQNDLSRRPDVQL
CCHHHHHHHCCCCCEEEEEEECCHHEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH
EDLQQIVPIQRIEVSEDPAAIEEKVLKGFVVVSFREQPGKAALISAANENLGLRENNDTE
HHHHHHCCHHHEECCCCHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
NEFSVVGPKVGFVENIGTNLHLLRRQIVTPNLVFREMMIGSVSKTKVVIAYIDGVANPET
CCEEEECCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHH
IRTMTQRIEAIDFDVVFDNAIIDQIIADNSKTPFPLFLSTERIDRAVYALVSGQVAVFCD
HHHHHHHHHHHEEEEEECHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCEEEEEC
GSPYAIIGPSTFFDFFTSPEDYSLPWVLGSFFRLIRFFGVMFSILASPVYIAVLTYHYEM
CCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPEDLLGPIIYSRSNVPFPPVLEVLFLEITIELLREAGARLPTKVAQTLGIVGGIVIGQA
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEHH
TVDAGLASTILLIVVALAALASFTTPIFKMSNSIRFIRFPFILFAACWGGIGIAFAVCGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LIHLGRLQSLGYPYLVPFYPLRVRNFRDTFVRSPYSMTAERPTFFRPQSRFRYDPENAKQ
HHHHHHHHHCCCCEECCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCHHHH
KRDIDE
HCCCCC
>Mature Secondary Structure 
PQLWEKLRRSSDFVEVSFVVGRKELSVYYFDSLVDPKVLQENILCHLQNDLSRRPDVQL
CHHHHHHHCCCCCEEEEEEECCHHEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH
EDLQQIVPIQRIEVSEDPAAIEEKVLKGFVVVSFREQPGKAALISAANENLGLRENNDTE
HHHHHHCCHHHEECCCCHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC
NEFSVVGPKVGFVENIGTNLHLLRRQIVTPNLVFREMMIGSVSKTKVVIAYIDGVANPET
CCEEEECCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHH
IRTMTQRIEAIDFDVVFDNAIIDQIIADNSKTPFPLFLSTERIDRAVYALVSGQVAVFCD
HHHHHHHHHHHEEEEEECHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCEEEEEC
GSPYAIIGPSTFFDFFTSPEDYSLPWVLGSFFRLIRFFGVMFSILASPVYIAVLTYHYEM
CCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPEDLLGPIIYSRSNVPFPPVLEVLFLEITIELLREAGARLPTKVAQTLGIVGGIVIGQA
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEHH
TVDAGLASTILLIVVALAALASFTTPIFKMSNSIRFIRFPFILFAACWGGIGIAFAVCGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LIHLGRLQSLGYPYLVPFYPLRVRNFRDTFVRSPYSMTAERPTFFRPQSRFRYDPENAKQ
HHHHHHHHHCCCCEECCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCHHHH
KRDIDE
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9852021 [H]