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The map label for this gene is ytbD [H]

Identifier: 138894451

GI number: 138894451

Start: 853009

End: 854031

Strand: Direct

Name: ytbD [H]

Synonym: GTNG_0779

Alternate gene names: 138894451

Gene position: 853009-854031 (Clockwise)

Preceding gene: 138894450

Following gene: 138894452

Centisome position: 24.03

GC content: 40.86

Gene sequence:

>1023_bases
ATGTGTCCAAATTTAGGGGGTCAATCCGCTGTGACATCGAATATGTCACGTAAATCGTTATTACTTTGGATTATGATTAT
TTTTATTATCGGAAATAGCATTGCTGCTAGTGCAACTAGTATTGGTGTGTTGTTAGTCGCTCGTGTGCTTTCGGCTTTTT
CACACGGGGTATTTATGTCAATTGGCTCCACGATCGCAGCAAGTTTAGTACCGGAAAATCGCAGAGCTAGTGCTATTTCC
ATTATGTTCACAGGTCTCACCGTAGCAACTATTACGGGTGTACCTTTTGGCACATTCATTGGGCAGCAATTCGGCTGGAG
GATTGCTTTTATATTTATTGTTGTTGTCGGCATTATTGCTTTCATCGCCAACGGTATTCTTGTTCCATCGAATTTACGAA
AAGGTGCTCGTACTACATTGGGTGATCAGTTCAAGCTTTTGACAAATGGCCGCTTATTGCTTTTATTTATCATTACAGCT
TTAGGATATGGAGGTACGTTTGTTGTCTTTACGTATTTATCTCCACTTCTTCAAGAGATCACTGGATTTCATGAGAAGAC
AGTTGCTGTCATTCTACTTATCTATGGAGTTGCCATTGCGATTGGTAACGTGATGGGTGGAAAGTTGTCTAATCAAAATC
CGATTGGTGCATTATTTTATATGTTTATTGTGCAAGCCATTGTGCTCTGTATCTTAACATTCACAGCTCCATTTAAAGCA
GCTGCATTCATTACGATCATCTTAATGGGATTGCTAGCTTTTATGAACGTGCCGGGACTGCAAGTATATGTAGTAATATT
AGCCGAGCGTTTTGTACCGAGTGCAGTAGATGTAGCTTCTGCGATTAATATTGCAGCATTTAACGCTGGAATCGCAATCG
GATCGTACCTGGGTGGGGTAATCACCGATTCGCTTGGACTTATTCATACACCGTGGATAGGAGCATTAATGGTTCTAGGA
GCTGTGATCTTAACAGATTGGAGTCGAACCCTAGAGCGAAAAGATCAAAAAAGTGTTGCGTAA

Upstream 100 bases:

>100_bases
TCGTTAATCATCAAAGAAGTTCGCGTATAAGGCAAGAGGATTTTGTCTTCTTGCCAAGAAAAAACGAGAAATTTTGAGAA
TAACCTAAAATTAAGATAGG

Downstream 100 bases:

>100_bases
AATTTAGATAAAGAAGGAAAGACATTCAAAAAAACGACCTTTCAATATACGTTTACAGAATGCGATGACTATCAACTATG
CTTGCTTTCTTTGTTGGTAT

Product: chloramphenicol resistance protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MCPNLGGQSAVTSNMSRKSLLLWIMIIFIIGNSIAASATSIGVLLVARVLSAFSHGVFMSIGSTIAASLVPENRRASAIS
IMFTGLTVATITGVPFGTFIGQQFGWRIAFIFIVVVGIIAFIANGILVPSNLRKGARTTLGDQFKLLTNGRLLLLFIITA
LGYGGTFVVFTYLSPLLQEITGFHEKTVAVILLIYGVAIAIGNVMGGKLSNQNPIGALFYMFIVQAIVLCILTFTAPFKA
AAFITIILMGLLAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNAGIAIGSYLGGVITDSLGLIHTPWIGALMVLG
AVILTDWSRTLERKDQKSVA

Sequences:

>Translated_340_residues
MCPNLGGQSAVTSNMSRKSLLLWIMIIFIIGNSIAASATSIGVLLVARVLSAFSHGVFMSIGSTIAASLVPENRRASAIS
IMFTGLTVATITGVPFGTFIGQQFGWRIAFIFIVVVGIIAFIANGILVPSNLRKGARTTLGDQFKLLTNGRLLLLFIITA
LGYGGTFVVFTYLSPLLQEITGFHEKTVAVILLIYGVAIAIGNVMGGKLSNQNPIGALFYMFIVQAIVLCILTFTAPFKA
AAFITIILMGLLAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNAGIAIGSYLGGVITDSLGLIHTPWIGALMVLG
AVILTDWSRTLERKDQKSVA
>Mature_340_residues
MCPNLGGQSAVTSNMSRKSLLLWIMIIFIIGNSIAASATSIGVLLVARVLSAFSHGVFMSIGSTIAASLVPENRRASAIS
IMFTGLTVATITGVPFGTFIGQQFGWRIAFIFIVVVGIIAFIANGILVPSNLRKGARTTLGDQFKLLTNGRLLLLFIITA
LGYGGTFVVFTYLSPLLQEITGFHEKTVAVILLIYGVAIAIGNVMGGKLSNQNPIGALFYMFIVQAIVLCILTFTAPFKA
AAFITIILMGLLAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNAGIAIGSYLGGVITDSLGLIHTPWIGALMVLG
AVILTDWSRTLERKDQKSVA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=328, Percent_Identity=33.2317073170732, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1786595, Length=304, Percent_Identity=30.2631578947368, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787808, Length=337, Percent_Identity=29.080118694362, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI145693198, Length=313, Percent_Identity=24.6006389776358, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 35993; Mature: 35993

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCPNLGGQSAVTSNMSRKSLLLWIMIIFIIGNSIAASATSIGVLLVARVLSAFSHGVFMS
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH
IGSTIAASLVPENRRASAISIMFTGLTVATITGVPFGTFIGQQFGWRIAFIFIVVVGIIA
HHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FIANGILVPSNLRKGARTTLGDQFKLLTNGRLLLLFIITALGYGGTFVVFTYLSPLLQEI
HHHCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TGFHEKTVAVILLIYGVAIAIGNVMGGKLSNQNPIGALFYMFIVQAIVLCILTFTAPFKA
HCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
AAFITIILMGLLAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNAGIAIGSYLGGV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITDSLGLIHTPWIGALMVLGAVILTDWSRTLERKDQKSVA
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCPNLGGQSAVTSNMSRKSLLLWIMIIFIIGNSIAASATSIGVLLVARVLSAFSHGVFMS
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH
IGSTIAASLVPENRRASAISIMFTGLTVATITGVPFGTFIGQQFGWRIAFIFIVVVGIIA
HHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FIANGILVPSNLRKGARTTLGDQFKLLTNGRLLLLFIITALGYGGTFVVFTYLSPLLQEI
HHHCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TGFHEKTVAVILLIYGVAIAIGNVMGGKLSNQNPIGALFYMFIVQAIVLCILTFTAPFKA
HCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
AAFITIILMGLLAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNAGIAIGSYLGGV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITDSLGLIHTPWIGALMVLGAVILTDWSRTLERKDQKSVA
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]