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The map label for this gene is yabO [H]

Identifier: 138893731

GI number: 138893731

Start: 64661

End: 64942

Strand: Direct

Name: yabO [H]

Synonym: GTNG_0052

Alternate gene names: 138893731

Gene position: 64661-64942 (Clockwise)

Preceding gene: 138893730

Following gene: 138893732

Centisome position: 1.82

GC content: 44.33

Gene sequence:

>282_bases
ATGCGTCTTGACAAATTTTTAAAAGTATCCCGGCTCATTAAACGCCGCACATTGGCGAAAGAAGTTGCTGATCAAGGCCG
AGTGTGGATCAACGGCCATGTTGCCAAAGCAAGTTCAAACGTGAAAATTGGTGATGAACTGACGATTCAGTTTGGGCAAA
AACGGGTAACAGTAAAAGTAGCTGATTTAAAAGAAACGACAAAAAAAGAAGAAGCGACGGGGTTGTATGAGCTGATTCGT
GAAGAACGGATCGCATCTGCGTCCGAACAAGACGGCGTCTAA

Upstream 100 bases:

>100_bases
AAGTACGAAAAAGCGGTCGGCCGATCACCTCGTTTTCACTCGCCGAGCTCGATCGATTTTGGGAAGAAGCAAAAGAAAAC
GGACGGTAAGGGGGATCATC

Downstream 100 bases:

>100_bases
TTTGTCCCGCGGGCTTGTTCTAAACCATCCCCCGCTGACATACATATGGTACAAACAGCGGATACGAAAAAAGCGGTGGG
CTCTGCCGCCTTTCATTCTA

Product: heat shock protein 15

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRVWINGHVAKASSNVKIGDELTIQFGQKRVTVKVADLKETTKKEEATGLYELIR
EERIASASEQDGV

Sequences:

>Translated_93_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRVWINGHVAKASSNVKIGDELTIQFGQKRVTVKVADLKETTKKEEATGLYELIR
EERIASASEQDGV
>Mature_93_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRVWINGHVAKASSNVKIGDELTIQFGQKRVTVKVADLKETTKKEEATGLYELIR
EERIASASEQDGV

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 10497; Mature: 10497

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRVWINGHVAKASSNVKIGDELTIQFGQKRVTVKV
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEEEECCEEEEEEE
ADLKETTKKEEATGLYELIREERIASASEQDGV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRVWINGHVAKASSNVKIGDELTIQFGQKRVTVKV
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEEEECCEEEEEEE
ADLKETTKKEEATGLYELIREERIASASEQDGV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]