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The map label for this gene is ybgJ [H]

Identifier: 134302656

GI number: 134302656

Start: 1728123

End: 1728740

Strand: Reverse

Name: ybgJ [H]

Synonym: FTW_1841

Alternate gene names: 134302656

Gene position: 1728740-1728123 (Counterclockwise)

Preceding gene: 134302658

Following gene: 134302655

Centisome position: 91.06

GC content: 32.52

Gene sequence:

>618_bases
ATGAATCATTACTTTTTAAATGAAAGTTGTTTTATCTATAATATTAGTGATAAATTGTGTTTAGACGATAATCTTAAAAT
CTTAAATATTTATCAGTATTTTAGTAGAGATGTTAGTTTTTGTCGTAAATATGCTATTTATGATATTGTTCCGGCATATA
ATTCGATAGCTTTTCACTTCGATTACCAGTATATTTATGATGTGGAAAGGGCTATTTTAGCTAAAATTAGAAATTTAAAC
CTTAGCACTAGTGTCGAGTCAAAAATTCATCAAATTGATGTCAGTCATACTGGAGTGGATTTGTACAATGCAGCTGAAAA
GCTTGGCTTAGATGTTAAGGAGATTATAAAAAGACATACTCAGGTTGAATACCACATTGCAATGCTAGGATTCAAGCCAT
ATTTTCCATATTTACTAGGGTTAGATCAAAGTTTAAGTTTGCCACGTTTAGCAACACCACGAAATAGAATCGCTGCAGGC
TCAGTTGCAATTGGTGGCTCGCAAACTACAATCTTTCCAGAGCAGTCACCTAGTGGTTGGAATATTATTGGGGTCTCTGA
TTTCAAAGATTTTGCTAAATTTAGTGCAGGCGACAAAATAATTTTTAGGGAGAAATAA

Upstream 100 bases:

>100_bases
TGCAATTGTCGGTTTAATAACACTATATAAGCTGAAAACCTTAAGAATTCTATAATAAATAGTAAATAACTTTAACTAAT
TCATTTTATGGGCACTATTT

Downstream 100 bases:

>100_bases
TGCTTTTAATAAATTGTGATTTAGGAGAGCGGGGTGTTGCTCATCCTATTGATGATAGGCTTGTTGACTACATTGACATA
GCAAATATAGCTTGTGGAGG

Product: putative allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNHYFLNESCFIYNISDKLCLDDNLKILNIYQYFSRDVSFCRKYAIYDIVPAYNSIAFHFDYQYIYDVERAILAKIRNLN
LSTSVESKIHQIDVSHTGVDLYNAAEKLGLDVKEIIKRHTQVEYHIAMLGFKPYFPYLLGLDQSLSLPRLATPRNRIAAG
SVAIGGSQTTIFPEQSPSGWNIIGVSDFKDFAKFSAGDKIIFREK

Sequences:

>Translated_205_residues
MNHYFLNESCFIYNISDKLCLDDNLKILNIYQYFSRDVSFCRKYAIYDIVPAYNSIAFHFDYQYIYDVERAILAKIRNLN
LSTSVESKIHQIDVSHTGVDLYNAAEKLGLDVKEIIKRHTQVEYHIAMLGFKPYFPYLLGLDQSLSLPRLATPRNRIAAG
SVAIGGSQTTIFPEQSPSGWNIIGVSDFKDFAKFSAGDKIIFREK
>Mature_205_residues
MNHYFLNESCFIYNISDKLCLDDNLKILNIYQYFSRDVSFCRKYAIYDIVPAYNSIAFHFDYQYIYDVERAILAKIRNLN
LSTSVESKIHQIDVSHTGVDLYNAAEKLGLDVKEIIKRHTQVEYHIAMLGFKPYFPYLLGLDQSLSLPRLATPRNRIAAG
SVAIGGSQTTIFPEQSPSGWNIIGVSDFKDFAKFSAGDKIIFREK

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=194, Percent_Identity=30.4123711340206, Blast_Score=94, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23515; Mature: 23515

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHYFLNESCFIYNISDKLCLDDNLKILNIYQYFSRDVSFCRKYAIYDIVPAYNSIAFHF
CCCEEECCCEEEEECCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEE
DYQYIYDVERAILAKIRNLNLSTSVESKIHQIDVSHTGVDLYNAAEKLGLDVKEIIKRHT
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHCCCHHHHHHHHC
QVEYHIAMLGFKPYFPYLLGLDQSLSLPRLATPRNRIAAGSVAIGGSQTTIFPEQSPSGW
CEEEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCEEECEEEECCCCEEECCCCCCCCC
NIIGVSDFKDFAKFSAGDKIIFREK
EEEEECCHHHHHHHCCCCEEEEECC
>Mature Secondary Structure
MNHYFLNESCFIYNISDKLCLDDNLKILNIYQYFSRDVSFCRKYAIYDIVPAYNSIAFHF
CCCEEECCCEEEEECCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEE
DYQYIYDVERAILAKIRNLNLSTSVESKIHQIDVSHTGVDLYNAAEKLGLDVKEIIKRHT
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHCCCHHHHHHHHC
QVEYHIAMLGFKPYFPYLLGLDQSLSLPRLATPRNRIAAGSVAIGGSQTTIFPEQSPSGW
CEEEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCEEECEEEECCCCEEECCCCCCCCC
NIIGVSDFKDFAKFSAGDKIIFREK
EEEEECCHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]