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The map label for this gene is cydB [H]

Identifier: 134302628

GI number: 134302628

Start: 1699938

End: 1701131

Strand: Direct

Name: cydB [H]

Synonym: FTW_1808

Alternate gene names: 134302628

Gene position: 1699938-1701131 (Clockwise)

Preceding gene: 134302627

Following gene: 134302629

Centisome position: 89.54

GC content: 35.76

Gene sequence:

>1194_bases
ATGTTATTAGACGTGTTACAAATTATCTCTTGGCTAGTTGTAGGAGTGCTAATATTTTTGGTAGCCGCTACAGTTGGTTT
TGATTTTGGGGTAGGAATCCTTGCAAAATTCGTTGGTAAAGACGATTACGAGAAAAGAGCTATCATAAATACCGTAGGAC
CTACATGGGATGGTAGCCAAGTTTGGTTTGTCACCGCTGGTGGTGCTATATTTGCAATCTGGCCTCAAGTATATGCTACT
AGCTTCTCAGGATTATATATTGCAATTTTAGTAGTACTATGGGGACTTTTCCTTAGACCTCCTGCTTTTGAGTATAGAAA
GAAAATAGACAATCCTAAATGGCGTAATTTCTGGGATTGGATGCTTGTACTTGGAAGTATAATCCCTATAGTTGTGATGG
GTGTAGCTGTTGGTAATCTTTTTTTAGGTTTTCCAATCTCTTATGATGATACTGCCAGACTGATTTATGGTACAGTAACA
AATGGTCAATATCAGTCGATGTGGATCACATTACTACATTTACTAACACCATTTGCACTATTATTTGGTATATTTGCATT
AAATATGGCACTAATGCATGGATCTGCTTATGCTAAGCTTAGAACTAGTGGTATTTTACGTGATAGGTTCAGAAAGATTA
CTAATGCAACAGCAAGTGTATATATAGTTTTATTCATAATCGCTGCAATTTGGATAACTTTTATACCTGGATATCAGTTT
ACTCCAGATGCTAGCTTAGCTCATCTATCAGATGCTTTAAATCATGCTTTCACATCAGGTAAAGTAACTACTGACTATTC
ATGGTACTATAATTTCAACCATGCACATATTTGGATGTGGTTTGCACCAGTACTAGCTTTTGTTGGCGCTATATTTGTTA
TTAGATTTAACAATCAAGACAGAGATGGCGCTGCTTTCTTAGCTAGTATGGCATCTTTACTTGGTGCTGTTTTAACCGTT
GGCTTTACTTTATTCCCATTTATTATGGTATCCAATATTGGTGACTATATGTATAGTCTAACAGTCTACAACTCAAGTAG
TAGCCAAACATCACTTATAGGTATATTATGCGCAGCTGTTATTATTCTTCCGATCATATTTAGCTATACATTCTTTGTCT
ATAAGAAAATGTGGGCTAATGGACGAAGAATATCAGCTGAAGAGATTAAAGCTAATTCACACGAAATGTACTAA

Upstream 100 bases:

>100_bases
GTATTTTTAATGTTCAAATATGCAAGACTTGGTCCTAGCTCTCTAGGTACTGGCAAATATTATTTTGAACAAAACAAAAA
AAGTAAATAAGGAGAGATAA

Downstream 100 bases:

>100_bases
ATAAGGAGAAAGTGTATGTATTATTTAGCATGGATTATATCAGCTGGTCTAGCAGTTACAGTAGGTTGTTTCGTAGCTAC
TAGATTAGAAAAAAAAGAAG

Product: cytochrome D ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MLLDVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQVWFVTAGGAIFAIWPQVYAT
SFSGLYIAILVVLWGLFLRPPAFEYRKKIDNPKWRNFWDWMLVLGSIIPIVVMGVAVGNLFLGFPISYDDTARLIYGTVT
NGQYQSMWITLLHLLTPFALLFGIFALNMALMHGSAYAKLRTSGILRDRFRKITNATASVYIVLFIIAAIWITFIPGYQF
TPDASLAHLSDALNHAFTSGKVTTDYSWYYNFNHAHIWMWFAPVLAFVGAIFVIRFNNQDRDGAAFLASMASLLGAVLTV
GFTLFPFIMVSNIGDYMYSLTVYNSSSSQTSLIGILCAAVIILPIIFSYTFFVYKKMWANGRRISAEEIKANSHEMY

Sequences:

>Translated_397_residues
MLLDVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQVWFVTAGGAIFAIWPQVYAT
SFSGLYIAILVVLWGLFLRPPAFEYRKKIDNPKWRNFWDWMLVLGSIIPIVVMGVAVGNLFLGFPISYDDTARLIYGTVT
NGQYQSMWITLLHLLTPFALLFGIFALNMALMHGSAYAKLRTSGILRDRFRKITNATASVYIVLFIIAAIWITFIPGYQF
TPDASLAHLSDALNHAFTSGKVTTDYSWYYNFNHAHIWMWFAPVLAFVGAIFVIRFNNQDRDGAAFLASMASLLGAVLTV
GFTLFPFIMVSNIGDYMYSLTVYNSSSSQTSLIGILCAAVIILPIIFSYTFFVYKKMWANGRRISAEEIKANSHEMY
>Mature_397_residues
MLLDVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQVWFVTAGGAIFAIWPQVYAT
SFSGLYIAILVVLWGLFLRPPAFEYRKKIDNPKWRNFWDWMLVLGSIIPIVVMGVAVGNLFLGFPISYDDTARLIYGTVT
NGQYQSMWITLLHLLTPFALLFGIFALNMALMHGSAYAKLRTSGILRDRFRKITNATASVYIVLFIIAAIWITFIPGYQF
TPDASLAHLSDALNHAFTSGKVTTDYSWYYNFNHAHIWMWFAPVLAFVGAIFVIRFNNQDRDGAAFLASMASLLGAVLTV
GFTLFPFIMVSNIGDYMYSLTVYNSSSSQTSLIGILCAAVIILPIIFSYTFFVYKKMWANGRRISAEEIKANSHEMY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=395, Percent_Identity=40.253164556962, Blast_Score=281, Evalue=4e-77,
Organism=Escherichia coli, GI1787213, Length=395, Percent_Identity=36.7088607594937, Blast_Score=262, Evalue=3e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 44483; Mature: 44483

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLDVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQ
CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCE
VWFVTAGGAIFAIWPQVYATSFSGLYIAILVVLWGLFLRPPAFEYRKKIDNPKWRNFWDW
EEEEEECCEEEEECHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHH
MLVLGSIIPIVVMGVAVGNLFLGFPISYDDTARLIYGTVTNGQYQSMWITLLHLLTPFAL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
LFGIFALNMALMHGSAYAKLRTSGILRDRFRKITNATASVYIVLFIIAAIWITFIPGYQF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPDASLAHLSDALNHAFTSGKVTTDYSWYYNFNHAHIWMWFAPVLAFVGAIFVIRFNNQD
CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCC
RDGAAFLASMASLLGAVLTVGFTLFPFIMVSNIGDYMYSLTVYNSSSSQTSLIGILCAAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHH
IILPIIFSYTFFVYKKMWANGRRISAEEIKANSHEMY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MLLDVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQ
CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCE
VWFVTAGGAIFAIWPQVYATSFSGLYIAILVVLWGLFLRPPAFEYRKKIDNPKWRNFWDW
EEEEEECCEEEEECHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHH
MLVLGSIIPIVVMGVAVGNLFLGFPISYDDTARLIYGTVTNGQYQSMWITLLHLLTPFAL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
LFGIFALNMALMHGSAYAKLRTSGILRDRFRKITNATASVYIVLFIIAAIWITFIPGYQF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPDASLAHLSDALNHAFTSGKVTTDYSWYYNFNHAHIWMWFAPVLAFVGAIFVIRFNNQD
CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCC
RDGAAFLASMASLLGAVLTVGFTLFPFIMVSNIGDYMYSLTVYNSSSSQTSLIGILCAAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHH
IILPIIFSYTFFVYKKMWANGRRISAEEIKANSHEMY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]