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The map label for this gene is cydA [H]

Identifier: 134302627

GI number: 134302627

Start: 1698173

End: 1699927

Strand: Direct

Name: cydA [H]

Synonym: FTW_1807

Alternate gene names: 134302627

Gene position: 1698173-1699927 (Clockwise)

Preceding gene: 134302626

Following gene: 134302628

Centisome position: 89.45

GC content: 37.04

Gene sequence:

>1755_bases
ATGTTACCAACGCTCATGTCTGTTGACTTAGCAAGATTACAGTTTGGTTTAACAGCATCATTTCACTTTTTATTTGTTCC
TCTAACTTTAGGTCTAACGTGGATCTTATTCACAATGGAGCTAATGTACATAAGAACAGGTAAAGAAGTTTATAAAGATA
TGGTGAAGTTTTGGGGTAAATTACTCGGAATAAACTTTGCACTAGGGATTATTACTGGTTTGACCATGGAATTTGAATTT
GGTACTAACTGGTCATACTACTCTCAATCAGTAGGTGATATTTTTGGTACACCACTAGCTATTGAAGGTTTAGCAGCATT
TATGCTTGAGTCTACATTTGCTGGTTTATTTTTCTTTGGTTGGGATAAACTTACAAAAAAACAACACCTACTTTCAACTT
TTTGTTTAGCAATTGGCTCAAGTTTCTCAGCTTTACTTATCTTAGTTGCAAACGGCTACATGCAGCATCCAGTCGGCTCT
GAATTTGTTGCTTCAACTATGAGAATGGAGACTGTTAGCTTATTAGATCTATTCCTTAACCATACAGCCCAAACAAATTT
TGGCCATGTGATGACTGCAGGATATACTACTGCTGCAATCTTTGTAATCGGGATAAGTGCATTTTATCTGATTAGAGGTC
GTGATATAGCATTTGCTAAGAGATCTATCGCGATTGGCTTAGGTTTTGGTTTAATTACATGTATAGTGGCGATTATCTTT
GGCGATGCAAATGGTGTAGATGCTTTTAGAGTACAACCACTAAAAATGGCTGCTATCGAAGCAGAATGGGATACTTCTAA
AGCTCCAGCAGCATTCAATGCAGTTGCGCTACCGAGTCAAAAAGAACAAAAAAATAATTTTGATGTTCCTATCCCTGCCG
TATTAGGTTTAATTGCAACTCACTCAACAGATACAGAAATTCCAGGAATCAAAGCTATACTCTATGGTAAAAAGACAGCT
GATGATACAAGAGATCCAAACCTTGCATACTACAGAGATATCAAAACAGGTCAAACTGCTGATGTTTCACCTGAAGATGC
TGCTGCTGATCCAAGCAAATATGAAAAAGTACCTTCTGCTTTAGTTATGATCAAAGAAGGTGGTCTTGCATATGCTGACC
TTCTAAAATGGCGTGAGACAGGACATAGTGGTGATACTCCTGATAGTAGCTACACTAACTACAACAACCCTACTTATCAG
AAGTACATGGGCTTTGGTAAAATGCTAGTACAAGCTGCTCAAGAAAAATATGGTGTGGCTGATTCAGCAACAATTGCCAA
AGCTGCAAATGATCCAGAATTAGTAAGAGCTGTTGCTACTAATATGGTTCCTGATGTTGCTAGTGTTTTCTGGAGCTTTA
GGATAATGGTATTCATAGGATTCTTTATGTTTACCTTAATAGTTGTTGGGCTAATTCTACTTGCTAGAAATGCTCTTACT
AGCAATGCATTTAGTAGATTTATCCTAAGGGTTATGATTTGGTCAATACCATTACCTTATATCGCATGTATTGCTGGCTG
GTATGTAACTGAACATGGTCGTCAACCTTGGACTGTTTATGACCAACTACCTACAAGTATTAGTTCTTCAGCATTAACTG
CTGCTGACGTTGGAACATCAATGGCGATATTCTTCTTAATAGATACTGCGCTATTTGCTGTAATGGTATTTTTAATGTTC
AAATATGCAAGACTTGGTCCTAGCTCTCTAGGTACTGGCAAATATTATTTTGAACAAAACAAAAAAAGTAAATAA

Upstream 100 bases:

>100_bases
AAAGTGACTACTGCTCAGATCAGCCTATTTTTTCTTCCGATTTTCTTTTTAGAAAAATTTAATAATACACAGTTACTTGA
GCTATAAGGAGAAAATAAAT

Downstream 100 bases:

>100_bases
GGAGAGATAAATGTTATTAGACGTGTTACAAATTATCTCTTGGCTAGTTGTAGGAGTGCTAATATTTTTGGTAGCCGCTA
CAGTTGGTTTTGATTTTGGG

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 584; Mature: 584

Protein sequence:

>584_residues
MLPTLMSVDLARLQFGLTASFHFLFVPLTLGLTWILFTMELMYIRTGKEVYKDMVKFWGKLLGINFALGIITGLTMEFEF
GTNWSYYSQSVGDIFGTPLAIEGLAAFMLESTFAGLFFFGWDKLTKKQHLLSTFCLAIGSSFSALLILVANGYMQHPVGS
EFVASTMRMETVSLLDLFLNHTAQTNFGHVMTAGYTTAAIFVIGISAFYLIRGRDIAFAKRSIAIGLGFGLITCIVAIIF
GDANGVDAFRVQPLKMAAIEAEWDTSKAPAAFNAVALPSQKEQKNNFDVPIPAVLGLIATHSTDTEIPGIKAILYGKKTA
DDTRDPNLAYYRDIKTGQTADVSPEDAAADPSKYEKVPSALVMIKEGGLAYADLLKWRETGHSGDTPDSSYTNYNNPTYQ
KYMGFGKMLVQAAQEKYGVADSATIAKAANDPELVRAVATNMVPDVASVFWSFRIMVFIGFFMFTLIVVGLILLARNALT
SNAFSRFILRVMIWSIPLPYIACIAGWYVTEHGRQPWTVYDQLPTSISSSALTAADVGTSMAIFFLIDTALFAVMVFLMF
KYARLGPSSLGTGKYYFEQNKKSK

Sequences:

>Translated_584_residues
MLPTLMSVDLARLQFGLTASFHFLFVPLTLGLTWILFTMELMYIRTGKEVYKDMVKFWGKLLGINFALGIITGLTMEFEF
GTNWSYYSQSVGDIFGTPLAIEGLAAFMLESTFAGLFFFGWDKLTKKQHLLSTFCLAIGSSFSALLILVANGYMQHPVGS
EFVASTMRMETVSLLDLFLNHTAQTNFGHVMTAGYTTAAIFVIGISAFYLIRGRDIAFAKRSIAIGLGFGLITCIVAIIF
GDANGVDAFRVQPLKMAAIEAEWDTSKAPAAFNAVALPSQKEQKNNFDVPIPAVLGLIATHSTDTEIPGIKAILYGKKTA
DDTRDPNLAYYRDIKTGQTADVSPEDAAADPSKYEKVPSALVMIKEGGLAYADLLKWRETGHSGDTPDSSYTNYNNPTYQ
KYMGFGKMLVQAAQEKYGVADSATIAKAANDPELVRAVATNMVPDVASVFWSFRIMVFIGFFMFTLIVVGLILLARNALT
SNAFSRFILRVMIWSIPLPYIACIAGWYVTEHGRQPWTVYDQLPTSISSSALTAADVGTSMAIFFLIDTALFAVMVFLMF
KYARLGPSSLGTGKYYFEQNKKSK
>Mature_584_residues
MLPTLMSVDLARLQFGLTASFHFLFVPLTLGLTWILFTMELMYIRTGKEVYKDMVKFWGKLLGINFALGIITGLTMEFEF
GTNWSYYSQSVGDIFGTPLAIEGLAAFMLESTFAGLFFFGWDKLTKKQHLLSTFCLAIGSSFSALLILVANGYMQHPVGS
EFVASTMRMETVSLLDLFLNHTAQTNFGHVMTAGYTTAAIFVIGISAFYLIRGRDIAFAKRSIAIGLGFGLITCIVAIIF
GDANGVDAFRVQPLKMAAIEAEWDTSKAPAAFNAVALPSQKEQKNNFDVPIPAVLGLIATHSTDTEIPGIKAILYGKKTA
DDTRDPNLAYYRDIKTGQTADVSPEDAAADPSKYEKVPSALVMIKEGGLAYADLLKWRETGHSGDTPDSSYTNYNNPTYQ
KYMGFGKMLVQAAQEKYGVADSATIAKAANDPELVRAVATNMVPDVASVFWSFRIMVFIGFFMFTLIVVGLILLARNALT
SNAFSRFILRVMIWSIPLPYIACIAGWYVTEHGRQPWTVYDQLPTSISSSALTAADVGTSMAIFFLIDTALFAVMVFLMF
KYARLGPSSLGTGKYYFEQNKKSK

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=576, Percent_Identity=45.8333333333333, Blast_Score=496, Evalue=1e-141,
Organism=Escherichia coli, GI1787212, Length=565, Percent_Identity=43.716814159292, Blast_Score=446, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 64228; Mature: 64228

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPTLMSVDLARLQFGLTASFHFLFVPLTLGLTWILFTMELMYIRTGKEVYKDMVKFWGK
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LLGINFALGIITGLTMEFEFGTNWSYYSQSVGDIFGTPLAIEGLAAFMLESTFAGLFFFG
HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WDKLTKKQHLLSTFCLAIGSSFSALLILVANGYMQHPVGSEFVASTMRMETVSLLDLFLN
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HTAQTNFGHVMTAGYTTAAIFVIGISAFYLIRGRDIAFAKRSIAIGLGFGLITCIVAIIF
HCCCCCCCCEEECCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHEEHHHHHHHHHHHHHH
GDANGVDAFRVQPLKMAAIEAEWDTSKAPAAFNAVALPSQKEQKNNFDVPIPAVLGLIAT
CCCCCCCHHEECCCCEEEEECCCCCCCCCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHC
HSTDTEIPGIKAILYGKKTADDTRDPNLAYYRDIKTGQTADVSPEDAAADPSKYEKVPSA
CCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCC
LVMIKEGGLAYADLLKWRETGHSGDTPDSSYTNYNNPTYQKYMGFGKMLVQAAQEKYGVA
EEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
DSATIAKAANDPELVRAVATNMVPDVASVFWSFRIMVFIGFFMFTLIVVGLILLARNALT
CCCHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNAFSRFILRVMIWSIPLPYIACIAGWYVTEHGRQPWTVYDQLPTSISSSALTAADVGTS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHCCHH
MAIFFLIDTALFAVMVFLMFKYARLGPSSLGTGKYYFEQNKKSK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MLPTLMSVDLARLQFGLTASFHFLFVPLTLGLTWILFTMELMYIRTGKEVYKDMVKFWGK
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LLGINFALGIITGLTMEFEFGTNWSYYSQSVGDIFGTPLAIEGLAAFMLESTFAGLFFFG
HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WDKLTKKQHLLSTFCLAIGSSFSALLILVANGYMQHPVGSEFVASTMRMETVSLLDLFLN
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HTAQTNFGHVMTAGYTTAAIFVIGISAFYLIRGRDIAFAKRSIAIGLGFGLITCIVAIIF
HCCCCCCCCEEECCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHEEHHHHHHHHHHHHHH
GDANGVDAFRVQPLKMAAIEAEWDTSKAPAAFNAVALPSQKEQKNNFDVPIPAVLGLIAT
CCCCCCCHHEECCCCEEEEECCCCCCCCCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHC
HSTDTEIPGIKAILYGKKTADDTRDPNLAYYRDIKTGQTADVSPEDAAADPSKYEKVPSA
CCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCC
LVMIKEGGLAYADLLKWRETGHSGDTPDSSYTNYNNPTYQKYMGFGKMLVQAAQEKYGVA
EEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
DSATIAKAANDPELVRAVATNMVPDVASVFWSFRIMVFIGFFMFTLIVVGLILLARNALT
CCCHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNAFSRFILRVMIWSIPLPYIACIAGWYVTEHGRQPWTVYDQLPTSISSSALTAADVGTS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHCCHH
MAIFFLIDTALFAVMVFLMFKYARLGPSSLGTGKYYFEQNKKSK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]