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The map label for this gene is oprF [H]

Identifier: 134302319

GI number: 134302319

Start: 1336465

End: 1337646

Strand: Reverse

Name: oprF [H]

Synonym: FTW_1428

Alternate gene names: 134302319

Gene position: 1337646-1336465 (Counterclockwise)

Preceding gene: 134302320

Following gene: 134302318

Centisome position: 70.46

GC content: 37.82

Gene sequence:

>1182_bases
TTGATGAGATTAAAAAGTATTGTTATAGCTACAACTGTATTATTAGGTTCAGCTACAGCATCTATCGCTGCAGGTTCAGA
TAATATCGATACATCAGCAAACACTAATTCAGCTACTACACAAAGCAGTGGTTTTGCAGCTAATAATTTCATTGCTCCTT
TTGCAAATACTTATAGCGCTTTGACTAACAAGGACAATACTTGGGGTCCTCAAGATAGAACTGGCCAGTGGTACTTAGGT
GTAGATGCTAACGGTCTAGCTAGAACTCCTAACTCTCCATCAGGTGCTGGTGCTAACTTCACAATCGGTTATAACATCAA
TAAATACTTCGCTGTACAGTACAACCAATTAGTTGGTAGAGTATTTGCTGGTTTAGGTGAAGGTGTTGTAAACTTTAGTA
ATAATACTATGTTTACTCCATATGCTGCAGGTGGTGCTGGTTGGGCAAATCTAGCAGGTCAAGCAACAGGTGCTTGGGAT
GTGGGTGGTGGTCTTAAGTTTGAACTATCTAGAAATGTTCAAGCAAGTGTTGACTACAGATATATCCAAACAATGGCACC
TAGTAATATTTCTGGTGCTAATGGCAGAGCGGGTACTAACATGATTGGTGCTGGTTTAACATGGTTCTTTGGTGGCAAAG
ATACTACTAATAATGACACTGGTAATATTCAGGATAATGGTGCGACTACAGCTGCTCAAACTGTTGCTATGCCAACTATT
GATGAGTCTAAGTATGTTTTACCTGCTGGTATTAAGCAATGTGAAGGCAACTTTAATCTAACTGAAGATGGTGTCGCGTG
CTATACAGTAAATGGTGATGATGTAACAGTTTACCTAGATACTAAGTTTGCTTATGATAAAGCTACTTTAAATGCTAAAG
GTAAAAAAGCTATTGCATCTTTTGTTAATTTTATCAAGGATAGTAACATTAGCTCTGTAACAGTTAAAGGTTATGCTTCT
CAAGGTCAAACTGGTAGCGAGTTTGATATATATAACCAAAAACTTTCTGAGAAGAGAGCACAAGCTGTTGCTGATTACAT
GAAGCAATTAGGTTTAGATAGTGAGAAAATAATTACTAAAGGTTTTGGCTATAATGATACTTTAGGTGGTATTCATAAGT
CTGATCCGCGTAACCAGCGTGTAGAAGCTAGCGTATCAGCTCCACTTAAAGAAGCTAACTAA

Upstream 100 bases:

>100_bases
AAAGCTATAAAAAACTCTTTGATTTTTATTTTAAATCATGTAGAATACTTGAATCTTATGTTTCGGCATGTGAATAGTTA
AAAAGTATTTAAAGGAGTTT

Downstream 100 bases:

>100_bases
TATCAATTTTTTCTAAAATCTCTTGATTTCTTTACGTCATTAATAAATGTTCTAAGCAATCAATTAAAGTATTGTATCTC
TAATTATTCAAATACCTACT

Product: ompA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MMRLKSIVIATTVLLGSATASIAAGSDNIDTSANTNSATTQSSGFAANNFIAPFANTYSALTNKDNTWGPQDRTGQWYLG
VDANGLARTPNSPSGAGANFTIGYNINKYFAVQYNQLVGRVFAGLGEGVVNFSNNTMFTPYAAGGAGWANLAGQATGAWD
VGGGLKFELSRNVQASVDYRYIQTMAPSNISGANGRAGTNMIGAGLTWFFGGKDTTNNDTGNIQDNGATTAAQTVAMPTI
DESKYVLPAGIKQCEGNFNLTEDGVACYTVNGDDVTVYLDTKFAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYAS
QGQTGSEFDIYNQKLSEKRAQAVADYMKQLGLDSEKIITKGFGYNDTLGGIHKSDPRNQRVEASVSAPLKEAN

Sequences:

>Translated_393_residues
MMRLKSIVIATTVLLGSATASIAAGSDNIDTSANTNSATTQSSGFAANNFIAPFANTYSALTNKDNTWGPQDRTGQWYLG
VDANGLARTPNSPSGAGANFTIGYNINKYFAVQYNQLVGRVFAGLGEGVVNFSNNTMFTPYAAGGAGWANLAGQATGAWD
VGGGLKFELSRNVQASVDYRYIQTMAPSNISGANGRAGTNMIGAGLTWFFGGKDTTNNDTGNIQDNGATTAAQTVAMPTI
DESKYVLPAGIKQCEGNFNLTEDGVACYTVNGDDVTVYLDTKFAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYAS
QGQTGSEFDIYNQKLSEKRAQAVADYMKQLGLDSEKIITKGFGYNDTLGGIHKSDPRNQRVEASVSAPLKEAN
>Mature_393_residues
MMRLKSIVIATTVLLGSATASIAAGSDNIDTSANTNSATTQSSGFAANNFIAPFANTYSALTNKDNTWGPQDRTGQWYLG
VDANGLARTPNSPSGAGANFTIGYNINKYFAVQYNQLVGRVFAGLGEGVVNFSNNTMFTPYAAGGAGWANLAGQATGAWD
VGGGLKFELSRNVQASVDYRYIQTMAPSNISGANGRAGTNMIGAGLTWFFGGKDTTNNDTGNIQDNGATTAAQTVAMPTI
DESKYVLPAGIKQCEGNFNLTEDGVACYTVNGDDVTVYLDTKFAYDKATLNAKGKKAIASFVNFIKDSNISSVTVKGYAS
QGQTGSEFDIYNQKLSEKRAQAVADYMKQLGLDSEKIITKGFGYNDTLGGIHKSDPRNQRVEASVSAPLKEAN

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 41476; Mature: 41476

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLKSIVIATTVLLGSATASIAAGSDNIDTSANTNSATTQSSGFAANNFIAPFANTYSA
CCCHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHH
LTNKDNTWGPQDRTGQWYLGVDANGLARTPNSPSGAGANFTIGYNINKYFAVQYNQLVGR
HCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEHHHHHHH
VFAGLGEGVVNFSNNTMFTPYAAGGAGWANLAGQATGAWDVGGGLKFELSRNVQASVDYR
HHHHCCCCEEEECCCEEEEEECCCCCCHHHCCCCCCCCEECCCCEEEEECCCCEEEECEE
YIQTMAPSNISGANGRAGTNMIGAGLTWFFGGKDTTNNDTGNIQDNGATTAAQTVAMPTI
EEEEECCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHEEECCCC
DESKYVLPAGIKQCEGNFNLTEDGVACYTVNGDDVTVYLDTKFAYDKATLNAKGKKAIAS
CCCCEECCCCHHHCCCCCCCCCCCEEEEEECCCEEEEEEECEEEECCEECCCCCHHHHHH
FVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQAVADYMKQLGLDSEKIITK
HHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEE
GFGYNDTLGGIHKSDPRNQRVEASVSAPLKEAN
CCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCC
>Mature Secondary Structure
MMRLKSIVIATTVLLGSATASIAAGSDNIDTSANTNSATTQSSGFAANNFIAPFANTYSA
CCCHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHH
LTNKDNTWGPQDRTGQWYLGVDANGLARTPNSPSGAGANFTIGYNINKYFAVQYNQLVGR
HCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEHHHHHHH
VFAGLGEGVVNFSNNTMFTPYAAGGAGWANLAGQATGAWDVGGGLKFELSRNVQASVDYR
HHHHCCCCEEEECCCEEEEEECCCCCCHHHCCCCCCCCEECCCCEEEEECCCCEEEECEE
YIQTMAPSNISGANGRAGTNMIGAGLTWFFGGKDTTNNDTGNIQDNGATTAAQTVAMPTI
EEEEECCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHEEECCCC
DESKYVLPAGIKQCEGNFNLTEDGVACYTVNGDDVTVYLDTKFAYDKATLNAKGKKAIAS
CCCCEECCCCHHHCCCCCCCCCCCEEEEEECCCEEEEEEECEEEECCEECCCCCHHHHHH
FVNFIKDSNISSVTVKGYASQGQTGSEFDIYNQKLSEKRAQAVADYMKQLGLDSEKIITK
HHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEE
GFGYNDTLGGIHKSDPRNQRVEASVSAPLKEAN
CCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]