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The map label for this gene is yjcD [H]

Identifier: 134302306

GI number: 134302306

Start: 1316388

End: 1318454

Strand: Reverse

Name: yjcD [H]

Synonym: FTW_1404

Alternate gene names: 134302306

Gene position: 1318454-1316388 (Counterclockwise)

Preceding gene: 134302307

Following gene: 134302304

Centisome position: 69.45

GC content: 29.8

Gene sequence:

>2067_bases
ATGCAATATACAGCCGAACAGCAAAAAATCATTAACCATGATATTGCTAAGCATGCTTTGGTTTCAGCGGTAGCAGGTAG
TGGTAAAACTCAAACTTTGATAGCACGAATTGGGTATCTGGTTAGCAATCAAGTAGCACCAAATAAAATCCTTGTATTAA
TGTACAATAAATCAGCCCAGCTTGATTTTGCTACACGTCTAAAAAAAGTTCTCAACCCTGAAATTGCTAAGCTAGTAAAT
GTGCGTACTATGCACTCCTTAGGTAATAGTTTTCTTCAAGCTTTTGCTAAGGCGGGTTTTGTCAAGGCCGATAAAATTCT
CAAGGAATATGAAGTAGATGCGATTATTGCTAAGTTGCTAAAAACCTATCAAAAAGAGTTTAATATAACCAAAGATATTG
ACAATGAACGAATAGAAACATTTAAGAACTATATTTCATTGTTAAAATCAGATTTATCTTTAGATAATAGTAAACTAAAA
GAGTTAAACTCAAAAGAAAAAAAATTATTAGATAAAATCTTTAACCAATTTAACCAAGAATGTAAAAATCAAAAAGCTAT
AACTTACGATGATATGATATATCTACCAGCTAAGCTTTTTGAAAAAGACAAGAATAGCGTTACTCAAGTAAGTAGTTTGT
ATTCACATATAATTATTGATGAATATCAAGATATAAATCAAGTTCAGCAGTTCTTGCTACGTTGTTTGGTTGGACGAACT
ACTTATGTGATGGCAGTTGGTGATGTAGATCAAACTATTTATCAGTGGCGTGGCTCGACACCTTATTATATGTTGGAAGG
TTTCAAAAAAGATTTTAAAGGAGTTGAGCAGTATACACTTTCGTATACTTTTCGTTATGGTGACCTAATATCGTTGATGG
CAAATAATATTATTGTCAATAATAAAAAACGACATAACAATTTATGTATAACTTACCCTAAACTAAATAAAGCTACCGAT
ATAAGTATTTTAGATAGTAGTGATAAAGTAGTACTAAAATTAAAAGCGTTAATACAAAATGGCGTTGATGCTAGTGATAT
AGCCATACTCGTACGTAAATATAATTCAACTACAGTTTTTGAACTAAGTTGTTTGTATCATGATTTAGCATATAGTATTG
TTGCTGACAAAAATATTTTTAGTGAGAATCTTTTTAAGGCTATTTATGGATATTTGATGTTATTTAACAAAGGTTATGGC
TTTGATAAACATACTCTCGAGCAGCGTGTAGAGTTTATCAAAGCAATGTTAGATTATCCTTCTTTGTATCTAAAAAAAGA
TCTTAAGCAAAAACTAGCTTCACAAATTGCTAGTGATATTTCTCAAGCTGCAAATTGTATTGCTGCTCTTAAGGAAACGG
TTGATAAAGCATTTAAACAAAAAAATATTTTAGCAATATCTAATAGTTGGCGTAATATTTTTAATAATGTACGTATAAAA
AAAGCAGATAAAGCGATTGATTTTATATTACAAAGTTTAGATTTAGAGAAGCAAATATCTAAGGTTTCAGGAGAAACTCA
TTCTAGTAAATCTAAGCTACAGATTATTGAAGGAATGGTTAGTTTTGCTAAAGGTAAAAAAAATACCTTGATTGAATTTA
TTGAACTTTTATATCAGCTTTATACTAGATCAAATCAGCAAAATCAAAGTAATCCTAATCAAATTCAAATTATGTCGATG
CATCGAGCTAAAGGTTTAGAGTGGGATTATGTTGTAGTTCATGATGCTACAGAAGGTGGTTTTTTTGGTGATAAAAATAC
CAAAGTTGATGATGAAATTATAGAAGAAGAACGACGACTATTTTATGTTGCGATTACACGAGTTAAGAAACATTTGTTTA
TAGTTTCATCTGATGATATAACACGTTTATCATCTTGGTATCAAATTAGAAAAAATACTTATCCACGTGATTTGAAATGT
AAGAATAGCCTAAGATTTTTATATGAAGGAAATTTAGTTGAGTGTGAGAATTATCTTGATAAGTCTAATTACCATGAGGA
TACTAAAAAACTTGATAATATAATCTTTAAAAGATATCACGACAAAATTACAACTGAGGTTGACTAG

Upstream 100 bases:

>100_bases
GTAAGCAGGCAGTTTTAACAGTTGGTTATGTTGTAACAAGGCTATTTGCTAACGATCAATCGCAAGATAAATAATTAATC
ACAAAGACAATAAGTAATCA

Downstream 100 bases:

>100_bases
TTTTGTGGTTGAGCGTTAGTGTTATTTTGAGTACTTTGCTGCACAACTGGAGCTTTGTCTTGTATCTCAAATGGTTTGTC
AGCAAAGTACATCGCTGGGT

Product: UvrD/REP helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 688; Mature: 688

Protein sequence:

>688_residues
MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQLDFATRLKKVLNPEIAKLVN
VRTMHSLGNSFLQAFAKAGFVKADKILKEYEVDAIIAKLLKTYQKEFNITKDIDNERIETFKNYISLLKSDLSLDNSKLK
ELNSKEKKLLDKIFNQFNQECKNQKAITYDDMIYLPAKLFEKDKNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVGRT
TYVMAVGDVDQTIYQWRGSTPYYMLEGFKKDFKGVEQYTLSYTFRYGDLISLMANNIIVNNKKRHNNLCITYPKLNKATD
ISILDSSDKVVLKLKALIQNGVDASDIAILVRKYNSTTVFELSCLYHDLAYSIVADKNIFSENLFKAIYGYLMLFNKGYG
FDKHTLEQRVEFIKAMLDYPSLYLKKDLKQKLASQIASDISQAANCIAALKETVDKAFKQKNILAISNSWRNIFNNVRIK
KADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQLYTRSNQQNQSNPNQIQIMSM
HRAKGLEWDYVVVHDATEGGFFGDKNTKVDDEIIEEERRLFYVAITRVKKHLFIVSSDDITRLSSWYQIRKNTYPRDLKC
KNSLRFLYEGNLVECENYLDKSNYHEDTKKLDNIIFKRYHDKITTEVD

Sequences:

>Translated_688_residues
MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQLDFATRLKKVLNPEIAKLVN
VRTMHSLGNSFLQAFAKAGFVKADKILKEYEVDAIIAKLLKTYQKEFNITKDIDNERIETFKNYISLLKSDLSLDNSKLK
ELNSKEKKLLDKIFNQFNQECKNQKAITYDDMIYLPAKLFEKDKNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVGRT
TYVMAVGDVDQTIYQWRGSTPYYMLEGFKKDFKGVEQYTLSYTFRYGDLISLMANNIIVNNKKRHNNLCITYPKLNKATD
ISILDSSDKVVLKLKALIQNGVDASDIAILVRKYNSTTVFELSCLYHDLAYSIVADKNIFSENLFKAIYGYLMLFNKGYG
FDKHTLEQRVEFIKAMLDYPSLYLKKDLKQKLASQIASDISQAANCIAALKETVDKAFKQKNILAISNSWRNIFNNVRIK
KADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQLYTRSNQQNQSNPNQIQIMSM
HRAKGLEWDYVVVHDATEGGFFGDKNTKVDDEIIEEERRLFYVAITRVKKHLFIVSSDDITRLSSWYQIRKNTYPRDLKC
KNSLRFLYEGNLVECENYLDKSNYHEDTKKLDNIIFKRYHDKITTEVD
>Mature_688_residues
MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQLDFATRLKKVLNPEIAKLVN
VRTMHSLGNSFLQAFAKAGFVKADKILKEYEVDAIIAKLLKTYQKEFNITKDIDNERIETFKNYISLLKSDLSLDNSKLK
ELNSKEKKLLDKIFNQFNQECKNQKAITYDDMIYLPAKLFEKDKNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVGRT
TYVMAVGDVDQTIYQWRGSTPYYMLEGFKKDFKGVEQYTLSYTFRYGDLISLMANNIIVNNKKRHNNLCITYPKLNKATD
ISILDSSDKVVLKLKALIQNGVDASDIAILVRKYNSTTVFELSCLYHDLAYSIVADKNIFSENLFKAIYGYLMLFNKGYG
FDKHTLEQRVEFIKAMLDYPSLYLKKDLKQKLASQIASDISQAANCIAALKETVDKAFKQKNILAISNSWRNIFNNVRIK
KADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQLYTRSNQQNQSNPNQIQIMSM
HRAKGLEWDYVVVHDATEGGFFGDKNTKVDDEIIEEERRLFYVAITRVKKHLFIVSSDDITRLSSWYQIRKNTYPRDLKC
KNSLRFLYEGNLVECENYLDKSNYHEDTKKLDNIIFKRYHDKITTEVD

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367296, Length=621, Percent_Identity=24.1545893719807, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI48994965, Length=635, Percent_Identity=22.2047244094488, Blast_Score=126, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6322369, Length=751, Percent_Identity=23.9680426098535, Blast_Score=97, Evalue=9e-21,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 79407; Mature: 79407

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
LDFATRLKKVLNPEIAKLVNVRTMHSLGNSFLQAFAKAGFVKADKILKEYEVDAIIAKLL
CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KTYQKEFNITKDIDNERIETFKNYISLLKSDLSLDNSKLKELNSKEKKLLDKIFNQFNQE
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHH
CKNQKAITYDDMIYLPAKLFEKDKNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVGRT
HCCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TYVMAVGDVDQTIYQWRGSTPYYMLEGFKKDFKGVEQYTLSYTFRYGDLISLMANNIIVN
EEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHCCEEEE
NKKRHNNLCITYPKLNKATDISILDSSDKVVLKLKALIQNGVDASDIAILVRKYNSTTVF
CCCCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHEEEEEECCCCEEE
ELSCLYHDLAYSIVADKNIFSENLFKAIYGYLMLFNKGYGFDKHTLEQRVEFIKAMLDYP
EHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
SLYLKKDLKQKLASQIASDISQAANCIAALKETVDKAFKQKNILAISNSWRNIFNNVRIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCEE
KADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQL
HHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
YTRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKVDDEIIEEERRL
HHCCCCCCCCCCCEEEEEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
FYVAITRVKKHLFIVSSDDITRLSSWYQIRKNTYPRDLKCKNSLRFLYEGNLVECENYLD
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEHHHHHC
KSNYHEDTKKLDNIIFKRYHDKITTEVD
CCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQYTAEQQKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
LDFATRLKKVLNPEIAKLVNVRTMHSLGNSFLQAFAKAGFVKADKILKEYEVDAIIAKLL
CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KTYQKEFNITKDIDNERIETFKNYISLLKSDLSLDNSKLKELNSKEKKLLDKIFNQFNQE
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHH
CKNQKAITYDDMIYLPAKLFEKDKNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVGRT
HCCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TYVMAVGDVDQTIYQWRGSTPYYMLEGFKKDFKGVEQYTLSYTFRYGDLISLMANNIIVN
EEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHCCEEEE
NKKRHNNLCITYPKLNKATDISILDSSDKVVLKLKALIQNGVDASDIAILVRKYNSTTVF
CCCCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHEEEEEECCCCEEE
ELSCLYHDLAYSIVADKNIFSENLFKAIYGYLMLFNKGYGFDKHTLEQRVEFIKAMLDYP
EHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
SLYLKKDLKQKLASQIASDISQAANCIAALKETVDKAFKQKNILAISNSWRNIFNNVRIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCEE
KADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQL
HHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
YTRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKVDDEIIEEERRL
HHCCCCCCCCCCCEEEEEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
FYVAITRVKKHLFIVSSDDITRLSSWYQIRKNTYPRDLKCKNSLRFLYEGNLVECENYLD
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEHHHHHC
KSNYHEDTKKLDNIIFKRYHDKITTEVD
CCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]