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The map label for this gene is yohD [H]

Identifier: 134302231

GI number: 134302231

Start: 1236630

End: 1237229

Strand: Direct

Name: yohD [H]

Synonym: FTW_1305

Alternate gene names: 134302231

Gene position: 1236630-1237229 (Clockwise)

Preceding gene: 134302230

Following gene: 134302232

Centisome position: 65.14

GC content: 30.67

Gene sequence:

>600_bases
ATGAGTGAAAGTGAATTCTCAAGCTTACTAATTGATTGGGGATATTTAGCTATCATGCTAGGGGTTTTTATCGAAGGTGA
AATATTCTTAATTATGGTAGGTATCGCAACTGCAACAGCATTATTTAGTTATCCTCTAGCAATTCTAGCAGCAACATTTG
CCGCGATTTTACATGATAATGGTCTATTTATATTTTCTAAATTCATGGGCAAAAAAATCTTTGAGAAAAAAGCATCATGG
CACTATAAGGCTCAAAAATCACTAGAGATTTTAGATAAGTATGAATCTTTAGCAATCCTTAGCATTAGATTTTTGTATGG
ATTACGCACTATAACTTTGTTGGTAGTTGGGCTTAGTAAAGTAAATAGAGTTAAGTTTATCTGCCTAGATAGTATTAGTA
GTTTTGTCTGGTCGATAATATATATTTCTCTAGGTTACCTATTTGGTAATACTATTTTAAAATTTATTGACAATAGTGAT
ATCAAAGATTGGATATCACATAATAAGCACTTATCAATATTTATACTTATATTAGTTTCGAGTATCATATACCTTAGCTA
TAGAATATTACGATCACGATCAAAGAGGCGCATTAGATGA

Upstream 100 bases:

>100_bases
ATCCTTGTGTTGGCATCAGAGGTGTACCAATAGCTGAGGCGATGTTAGCACTAGTTTTAGTTGATGAACTCCTAATTACG
CGATCTTATAGGGATTAGAC

Downstream 100 bases:

>100_bases
GTAGATTAGATCTGCTAAAAAAAGCAACTCCACAGAGTAAAAAACCTCAAAATACGACTAAAAGAAATCCACGCGGAGGA
ATGCTAGCTGAGAAAACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSESEFSSLLIDWGYLAIMLGVFIEGEIFLIMVGIATATALFSYPLAILAATFAAILHDNGLFIFSKFMGKKIFEKKASW
HYKAQKSLEILDKYESLAILSIRFLYGLRTITLLVVGLSKVNRVKFICLDSISSFVWSIIYISLGYLFGNTILKFIDNSD
IKDWISHNKHLSIFILILVSSIIYLSYRILRSRSKRRIR

Sequences:

>Translated_199_residues
MSESEFSSLLIDWGYLAIMLGVFIEGEIFLIMVGIATATALFSYPLAILAATFAAILHDNGLFIFSKFMGKKIFEKKASW
HYKAQKSLEILDKYESLAILSIRFLYGLRTITLLVVGLSKVNRVKFICLDSISSFVWSIIYISLGYLFGNTILKFIDNSD
IKDWISHNKHLSIFILILVSSIIYLSYRILRSRSKRRIR
>Mature_198_residues
SESEFSSLLIDWGYLAIMLGVFIEGEIFLIMVGIATATALFSYPLAILAATFAAILHDNGLFIFSKFMGKKIFEKKASWH
YKAQKSLEILDKYESLAILSIRFLYGLRTITLLVVGLSKVNRVKFICLDSISSFVWSIIYISLGYLFGNTILKFIDNSDI
KDWISHNKHLSIFILILVSSIIYLSYRILRSRSKRRIR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=166, Percent_Identity=25.3012048192771, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789481, Length=147, Percent_Identity=28.5714285714286, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22797; Mature: 22666

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESEFSSLLIDWGYLAIMLGVFIEGEIFLIMVGIATATALFSYPLAILAATFAAILHDN
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GLFIFSKFMGKKIFEKKASWHYKAQKSLEILDKYESLAILSIRFLYGLRTITLLVVGLSK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNRVKFICLDSISSFVWSIIYISLGYLFGNTILKFIDNSDIKDWISHNKHLSIFILILVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHH
SIIYLSYRILRSRSKRRIR
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SESEFSSLLIDWGYLAIMLGVFIEGEIFLIMVGIATATALFSYPLAILAATFAAILHDN
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GLFIFSKFMGKKIFEKKASWHYKAQKSLEILDKYESLAILSIRFLYGLRTITLLVVGLSK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNRVKFICLDSISSFVWSIIYISLGYLFGNTILKFIDNSDIKDWISHNKHLSIFILILVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHH
SIIYLSYRILRSRSKRRIR
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]