Click here to switch to the map view.

The map label for this gene is sodC

Identifier: 134302227

GI number: 134302227

Start: 1233527

End: 1234084

Strand: Reverse

Name: sodC

Synonym: FTW_1301

Alternate gene names: 134302227

Gene position: 1234084-1233527 (Counterclockwise)

Preceding gene: 134302235

Following gene: 134302226

Centisome position: 65.0

GC content: 41.04

Gene sequence:

>558_bases
ATGACTGCTTTTTATAAATTATGTGGAATGAGTATGCTTTCACTTGTATTAGCAGACTGCACATTCTTGTCAGCAAATAA
GCCTTATGATCGCGACCATGATGGCGAGTTAATTGTACATATGAAAGATGTCAATACTCATAAAGAGGTTGGAACAATCA
CAATATCACCATATATTCATGATGGTAACCAAGAAGGGATGTTGATTACGCCACATTTATATAATTTACCTGCTAATACT
ACTCATGGCATGCATATCCATATCAATCCTAGTTGTGAAGATAATGGTATCGCAGCAGGTGGGCATTGGGATCCAGATAA
TACGCAAAAGCACCTTGGCCCATACAATGATAATGGACATAAGGGCGATTTGCCTGTACTAGTTGTTAACGCAGATGGTA
CAGCAACTGAGCCTGTTGTAGCGCCAAAGCTTAATTCTCTAGAAGAGCTAGCGGGTCATAGTTTGATGCTTCATGCGGGA
GGCGATAATTACTCTGATAAGCCACAACCTCTAGGCGGAGGTGGTGCTAGAATGTGGTGTGGAGTTATAGCAGACTAA

Upstream 100 bases:

>100_bases
TTAGATAATATATAGCTGTTTAATCGTATTTTAATATAGATAATATTTTTAAATATTTGTATGATTACAAAGGATATGAC
CTAAATTTTGGAGGTGAAAA

Downstream 100 bases:

>100_bases
ACTATGAGTTATGAGTTAGAGGTACGCTTAGGTTTTTTCTTATTGATACTCGTTACAGTGTCATTATGGGAGCTACTTGC
ACCAATGCGTAGACTGAAAA

Product: copper/zinc superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTAFYKLCGMSMLSLVLADCTFLSANKPYDRDHDGELIVHMKDVNTHKEVGTITISPYIHDGNQEGMLITPHLYNLPANT
THGMHIHINPSCEDNGIAAGGHWDPDNTQKHLGPYNDNGHKGDLPVLVVNADGTATEPVVAPKLNSLEELAGHSLMLHAG
GDNYSDKPQPLGGGGARMWCGVIAD

Sequences:

>Translated_185_residues
MTAFYKLCGMSMLSLVLADCTFLSANKPYDRDHDGELIVHMKDVNTHKEVGTITISPYIHDGNQEGMLITPHLYNLPANT
THGMHIHINPSCEDNGIAAGGHWDPDNTQKHLGPYNDNGHKGDLPVLVVNADGTATEPVVAPKLNSLEELAGHSLMLHAG
GDNYSDKPQPLGGGGARMWCGVIAD
>Mature_184_residues
TAFYKLCGMSMLSLVLADCTFLSANKPYDRDHDGELIVHMKDVNTHKEVGTITISPYIHDGNQEGMLITPHLYNLPANTT
HGMHIHINPSCEDNGIAAGGHWDPDNTQKHLGPYNDNGHKGDLPVLVVNADGTATEPVVAPKLNSLEELAGHSLMLHAGG
DNYSDKPQPLGGGGARMWCGVIAD

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family

Homologues:

Organism=Escherichia coli, GI1787934, Length=189, Percent_Identity=42.3280423280423, Blast_Score=127, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SODC_FRATH (Q59448)

Other databases:

- EMBL:   U35670
- EMBL:   AM233362
- RefSeq:   YP_513156.1
- ProteinModelPortal:   Q59448
- SMR:   Q59448
- GeneID:   3952560
- GenomeReviews:   AM233362_GR
- KEGG:   ftl:FTL_0380
- HOGENOM:   HBG609879
- OMA:   MAAGGHW
- ProtClustDB:   CLSK934731
- BioCyc:   FTUL351581:FTL_0380-MONOMER
- InterPro:   IPR018152
- InterPro:   IPR001424
- Gene3D:   G3DSA:2.60.40.200
- PANTHER:   PTHR10003

Pfam domain/function: PF00080 Sod_Cu; SSF49329 SOD_Cu_Zn

EC number: =1.15.1.1

Molecular weight: Translated: 19888; Mature: 19756

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS00087 SOD_CU_ZN_1; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFYKLCGMSMLSLVLADCTFLSANKPYDRDHDGELIVHMKDVNTHKEVGTITISPYIH
CCHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEE
DGNQEGMLITPHLYNLPANTTHGMHIHINPSCEDNGIAAGGHWDPDNTQKHLGPYNDNGH
CCCCCCEEECCEEEECCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCHHHCCCCCCCCC
KGDLPVLVVNADGTATEPVVAPKLNSLEELAGHSLMLHAGGDNYSDKPQPLGGGGARMWC
CCCCCEEEECCCCCCCCCEECCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEE
GVIAD
EEECC
>Mature Secondary Structure 
TAFYKLCGMSMLSLVLADCTFLSANKPYDRDHDGELIVHMKDVNTHKEVGTITISPYIH
CHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEE
DGNQEGMLITPHLYNLPANTTHGMHIHINPSCEDNGIAAGGHWDPDNTQKHLGPYNDNGH
CCCCCCEEECCEEEECCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCHHHCCCCCCCCC
KGDLPVLVVNADGTATEPVVAPKLNSLEELAGHSLMLHAGGDNYSDKPQPLGGGGARMWC
CCCCCEEEECCCCCCCCCEECCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEE
GVIAD
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA