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The map label for this gene is yfjD [H]

Identifier: 134302020

GI number: 134302020

Start: 995420

End: 996679

Strand: Reverse

Name: yfjD [H]

Synonym: FTW_1052

Alternate gene names: 134302020

Gene position: 996679-995420 (Counterclockwise)

Preceding gene: 134302021

Following gene: 134302008

Centisome position: 52.5

GC content: 30.56

Gene sequence:

>1260_bases
ATGAGTACTTATACTGTAGTTATTATCATATTTATACTTATTTGTATATCTGCTTTTTTCTCAAGCTCTGAGACAGCGAT
GATAGCATTAAATAAATATAAACTTAAACATTTAGCCAAAAAAAATCATCGTGCCGCAAAGAGAAGCTTATCTTTAGTAC
GCAACCCAGAGAGATTACTAGTTGCTATTCTTATTGGTAATACTTTTGCAAATATCTTTGCTGGAACTGTGATTTCCTCA
TACTCTGAGGATCATTTCGGTGATTTAGGATTGCTTATTGCAACTATAGTTGTAACTATATTGGTTTTGGTTTTTGGTGA
GATAATTCCTAAATCTTTCGCAGCTATTTACCCACAAAAGTTAGCCTTTCCTTTTTCTTTGCCATTAAAAATAATCATGC
TAATTTTATATCCAGCGGTGATATTTTTAAGTATGGTTTCAAAAGTAACATTAAAACTTTTTGGTGTCAAAATAGAAGCT
GTTAATAATGAGTCTTTGGATAAAGAAGAAATCCAAACTGTTGTTAATGAGTCAAATGCAAAGCTTGGAGCTAAAAATAA
AAATATGCTCTTGGGAGTTTTAGAGTTAGATAAAGTTTTAGTACAAGAAGTAATGACCCATTTTAATAAGATTGAATATA
TTGATTTAAGTAATTCAATCGATAAAATTTTAGCTAGAATTGCAAAGATGAGATCATTAAATATTATTCTCTGTGAGAAT
GGCGTAAATAATATTATTGGGGTAATTAGGTTAAAAGAGATAACTAACTTATTAATTTCTTCAAAAAAAGGTCAGATAAG
CAAAGCAGCGTTACGCAAGATCGCCCAAGAAGCATATTTTATTCCTGAAACAGTCTCGTTACAAACACAACTTATAAATT
TTCAACAAAAAAGTAAGCGCTTTGCAATCGTTGTTGATGAGTATGGTGATGTATGTGGGACGGTGACAATCGAAGATATT
ATGGAAGAGATAGTCGGCGAATTCTCTGATAGATTTGATGTCAATAACAATATCCGTAAACTTGAAGATAATAGTTATCT
GATAGGAGGTAGTGCTACTTTAAGAGAGATTAATCGCCATATAGGTATAGAATTTGAAAGTGAAGATGCTAAGACATTGT
CTGGTCTTATAATTGAGGAAATAGAGAATCTACCATCGGGACCTTGTTGTATAAAATACAATAATATTCTATTAGAAATA
ACAAATATTAGGGATAATAAAATAGTTTCTATAAAGTTAACTATTACTACAGAAACTTAG

Upstream 100 bases:

>100_bases
TATAACTATTTCATCTTTATATTTATTTCCATAATATATTTTTCTATTAAAAAATTCTTGTGTTAAACTAGTAAATTAGT
TGTAACGATACACTAATTAA

Downstream 100 bases:

>100_bases
TGGTTGTGATTTTAATATTGAATTAATCTAGATATAATGTGACACTGCTCTTGTATGAGAGTAAGTTACTTGTTTTAATA
AGAGTGAAAAAACAAAGAGA

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MSTYTVVIIIFILICISAFFSSSETAMIALNKYKLKHLAKKNHRAAKRSLSLVRNPERLLVAILIGNTFANIFAGTVISS
YSEDHFGDLGLLIATIVVTILVLVFGEIIPKSFAAIYPQKLAFPFSLPLKIIMLILYPAVIFLSMVSKVTLKLFGVKIEA
VNNESLDKEEIQTVVNESNAKLGAKNKNMLLGVLELDKVLVQEVMTHFNKIEYIDLSNSIDKILARIAKMRSLNIILCEN
GVNNIIGVIRLKEITNLLISSKKGQISKAALRKIAQEAYFIPETVSLQTQLINFQQKSKRFAIVVDEYGDVCGTVTIEDI
MEEIVGEFSDRFDVNNNIRKLEDNSYLIGGSATLREINRHIGIEFESEDAKTLSGLIIEEIENLPSGPCCIKYNNILLEI
TNIRDNKIVSIKLTITTET

Sequences:

>Translated_419_residues
MSTYTVVIIIFILICISAFFSSSETAMIALNKYKLKHLAKKNHRAAKRSLSLVRNPERLLVAILIGNTFANIFAGTVISS
YSEDHFGDLGLLIATIVVTILVLVFGEIIPKSFAAIYPQKLAFPFSLPLKIIMLILYPAVIFLSMVSKVTLKLFGVKIEA
VNNESLDKEEIQTVVNESNAKLGAKNKNMLLGVLELDKVLVQEVMTHFNKIEYIDLSNSIDKILARIAKMRSLNIILCEN
GVNNIIGVIRLKEITNLLISSKKGQISKAALRKIAQEAYFIPETVSLQTQLINFQQKSKRFAIVVDEYGDVCGTVTIEDI
MEEIVGEFSDRFDVNNNIRKLEDNSYLIGGSATLREINRHIGIEFESEDAKTLSGLIIEEIENLPSGPCCIKYNNILLEI
TNIRDNKIVSIKLTITTET
>Mature_418_residues
STYTVVIIIFILICISAFFSSSETAMIALNKYKLKHLAKKNHRAAKRSLSLVRNPERLLVAILIGNTFANIFAGTVISSY
SEDHFGDLGLLIATIVVTILVLVFGEIIPKSFAAIYPQKLAFPFSLPLKIIMLILYPAVIFLSMVSKVTLKLFGVKIEAV
NNESLDKEEIQTVVNESNAKLGAKNKNMLLGVLELDKVLVQEVMTHFNKIEYIDLSNSIDKILARIAKMRSLNIILCENG
VNNIIGVIRLKEITNLLISSKKGQISKAALRKIAQEAYFIPETVSLQTQLINFQQKSKRFAIVVDEYGDVCGTVTIEDIM
EEIVGEFSDRFDVNNNIRKLEDNSYLIGGSATLREINRHIGIEFESEDAKTLSGLIIEEIENLPSGPCCIKYNNILLEIT
NIRDNKIVSIKLTITTET

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=390, Percent_Identity=26.6666666666667, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI40068053, Length=350, Percent_Identity=25.1428571428571, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40068055, Length=350, Percent_Identity=25.1428571428571, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI94681046, Length=341, Percent_Identity=25.2199413489736, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=36.6834170854271, Blast_Score=300, Evalue=9e-83,
Organism=Escherichia coli, GI1790664, Length=426, Percent_Identity=23.7089201877934, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI87082033, Length=323, Percent_Identity=23.8390092879257, Blast_Score=95, Evalue=9e-21,
Organism=Escherichia coli, GI1786879, Length=262, Percent_Identity=21.7557251908397, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788119, Length=321, Percent_Identity=24.6105919003115, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71980512, Length=365, Percent_Identity=24.9315068493151, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46761; Mature: 46629

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTYTVVIIIFILICISAFFSSSETAMIALNKYKLKHLAKKNHRAAKRSLSLVRNPERLL
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHE
VAILIGNTFANIFAGTVISSYSEDHFGDLGLLIATIVVTILVLVFGEIIPKSFAAIYPQK
EEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LAFPFSLPLKIIMLILYPAVIFLSMVSKVTLKLFGVKIEAVNNESLDKEEIQTVVNESNA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHCCCCC
KLGAKNKNMLLGVLELDKVLVQEVMTHFNKIEYIDLSNSIDKILARIAKMRSLNIILCEN
CCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
GVNNIIGVIRLKEITNLLISSKKGQISKAALRKIAQEAYFIPETVSLQTQLINFQQKSKR
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCE
FAIVVDEYGDVCGTVTIEDIMEEIVGEFSDRFDVNNNIRKLEDNSYLIGGSATLREINRH
EEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCCHHHHHHHHH
IGIEFESEDAKTLSGLIIEEIENLPSGPCCIKYNNILLEITNIRDNKIVSIKLTITTET
HCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCEEEEEEEEEEECC
>Mature Secondary Structure 
STYTVVIIIFILICISAFFSSSETAMIALNKYKLKHLAKKNHRAAKRSLSLVRNPERLL
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHE
VAILIGNTFANIFAGTVISSYSEDHFGDLGLLIATIVVTILVLVFGEIIPKSFAAIYPQK
EEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
LAFPFSLPLKIIMLILYPAVIFLSMVSKVTLKLFGVKIEAVNNESLDKEEIQTVVNESNA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHCCCCC
KLGAKNKNMLLGVLELDKVLVQEVMTHFNKIEYIDLSNSIDKILARIAKMRSLNIILCEN
CCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
GVNNIIGVIRLKEITNLLISSKKGQISKAALRKIAQEAYFIPETVSLQTQLINFQQKSKR
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCE
FAIVVDEYGDVCGTVTIEDIMEEIVGEFSDRFDVNNNIRKLEDNSYLIGGSATLREINRH
EEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEECCCHHHHHHHHH
IGIEFESEDAKTLSGLIIEEIENLPSGPCCIKYNNILLEITNIRDNKIVSIKLTITTET
HCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]