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The map label for this gene is ychF [H]

Identifier: 134302017

GI number: 134302017

Start: 992449

End: 993540

Strand: Direct

Name: ychF [H]

Synonym: FTW_1049

Alternate gene names: 134302017

Gene position: 992449-993540 (Clockwise)

Preceding gene: 134302016

Following gene: 134302018

Centisome position: 52.28

GC content: 35.16

Gene sequence:

>1092_bases
ATGGGATTTAAATGTGGTATAGTAGGTTTACCAAATGTTGGCAAATCAACTCTTTTTAATGCTCTTACAGAAGCAGGAAT
TGATGCAGAAAATTACCCTTTTTGTACAATTGATCCAAATGTTGGGATCGTTTCAGTACCAGATCAAAGACTTAATGAAT
TAGCAAAAATTGTTAAGCCAGAAAGAATAATAACGACAACAATGGAGTTTGTAGATATTGCTGGACTTGTCACTGGAGCA
AGTAAAGGCGAAGGCTTAGGTAATAAATTCCTTGCAAATATTCGTGAAACAGATGCTATAGCTCATGTTGTAAGATGCTT
TGAAGATGACAATATAATTCATGTTAGTGGTAAAGTTGATCCTATAGATGATATTAATACTATCAATATGGAGCTAATCC
TAGCTGATATCGAATCTTGTGATAGAACTGTACAAAGATTCGCAAAAATGAAAAAATCAGGTGATAAAGAAGCTTTAGCT
AAAGCAGATTTTTATACTAGATTAAAAGAGCACTTAGAATCAGAGAAGCCTGCAAGGACTTTTGAGATGAATGAGGATGA
AACTAAATGGCTAAAACAAACTCCTCTATTAACTAGTAAGCCTGTCCTGTATATTGCAAATGTCAATGAAAATGGTTTTG
AAAATAATCCCCTTCTAGATAAGGTTGTAGAATATGCTAAAGCTGAAAACTCAAATGTTGTGCCAGTTTGTGCTGCTATG
GAACAAGAAATTTCTCAGCTAGAAGCTGATGAAAAACTAGAATTTTTAGCTGATATGGGTCTATCAGAAACTGGTTTAGA
TAGAGTTATTAAAGCTGGTTACGCCTTACTCAACTTGCATACATATCTAACAGCAGGTGTCAAAGAAGTAAGAGCATGGA
CAATCCCTGTAGGAGCAACTGCACCACAAGCGGCTGGAGTAATCCATACTGACTTTGAACGTGGTTTTATCAGAGCTGAA
GTTATCGCATACGATGATTACATTAAATATAATGGTGAAAAAGGTGCCAAAGAAGCAGGTAAAGCTCGTCTTGAAGGTAA
AGAATACATCATGAAAGATGGGGATGTAGTTAACTTTAGATTTAATGTATAG

Upstream 100 bases:

>100_bases
TATTGATAATGGTATCTGTTTTTTAGATGATATAATAAATTACAAATTAGAACCTGTAATGCAGAAGCTACATACAAAAT
AATATATAAGGAATAAAATA

Downstream 100 bases:

>100_bases
TCAAACTTTCAAAAATGTCTAAAATAATTAATAATTGTCTTATATGGTTATCAGTGCTAAGTATAGTTGGTTGTAATACT
TCATTTACTTATCCTAATTA

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MGFKCGIVGLPNVGKSTLFNALTEAGIDAENYPFCTIDPNVGIVSVPDQRLNELAKIVKPERIITTTMEFVDIAGLVTGA
SKGEGLGNKFLANIRETDAIAHVVRCFEDDNIIHVSGKVDPIDDINTINMELILADIESCDRTVQRFAKMKKSGDKEALA
KADFYTRLKEHLESEKPARTFEMNEDETKWLKQTPLLTSKPVLYIANVNENGFENNPLLDKVVEYAKAENSNVVPVCAAM
EQEISQLEADEKLEFLADMGLSETGLDRVIKAGYALLNLHTYLTAGVKEVRAWTIPVGATAPQAAGVIHTDFERGFIRAE
VIAYDDYIKYNGEKGAKEAGKARLEGKEYIMKDGDVVNFRFNV

Sequences:

>Translated_363_residues
MGFKCGIVGLPNVGKSTLFNALTEAGIDAENYPFCTIDPNVGIVSVPDQRLNELAKIVKPERIITTTMEFVDIAGLVTGA
SKGEGLGNKFLANIRETDAIAHVVRCFEDDNIIHVSGKVDPIDDINTINMELILADIESCDRTVQRFAKMKKSGDKEALA
KADFYTRLKEHLESEKPARTFEMNEDETKWLKQTPLLTSKPVLYIANVNENGFENNPLLDKVVEYAKAENSNVVPVCAAM
EQEISQLEADEKLEFLADMGLSETGLDRVIKAGYALLNLHTYLTAGVKEVRAWTIPVGATAPQAAGVIHTDFERGFIRAE
VIAYDDYIKYNGEKGAKEAGKARLEGKEYIMKDGDVVNFRFNV
>Mature_362_residues
GFKCGIVGLPNVGKSTLFNALTEAGIDAENYPFCTIDPNVGIVSVPDQRLNELAKIVKPERIITTTMEFVDIAGLVTGAS
KGEGLGNKFLANIRETDAIAHVVRCFEDDNIIHVSGKVDPIDDINTINMELILADIESCDRTVQRFAKMKKSGDKEALAK
ADFYTRLKEHLESEKPARTFEMNEDETKWLKQTPLLTSKPVLYIANVNENGFENNPLLDKVVEYAKAENSNVVPVCAAME
QEISQLEADEKLEFLADMGLSETGLDRVIKAGYALLNLHTYLTAGVKEVRAWTIPVGATAPQAAGVIHTDFERGFIRAEV
IAYDDYIKYNGEKGAKEAGKARLEGKEYIMKDGDVVNFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=367, Percent_Identity=44.6866485013624, Blast_Score=309, Evalue=3e-84,
Organism=Homo sapiens, GI58761502, Length=217, Percent_Identity=39.1705069124424, Blast_Score=160, Evalue=2e-39,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=65.564738292011, Blast_Score=501, Evalue=1e-143,
Organism=Escherichia coli, GI1789574, Length=134, Percent_Identity=27.6119402985075, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=365, Percent_Identity=41.6438356164384, Blast_Score=296, Evalue=2e-80,
Organism=Saccharomyces cerevisiae, GI6319499, Length=372, Percent_Identity=38.1720430107527, Blast_Score=241, Evalue=1e-64,
Organism=Saccharomyces cerevisiae, GI6321773, Length=382, Percent_Identity=36.6492146596859, Blast_Score=214, Evalue=2e-56,
Organism=Saccharomyces cerevisiae, GI6321649, Length=143, Percent_Identity=37.7622377622378, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640873, Length=366, Percent_Identity=40.7103825136612, Blast_Score=281, Evalue=5e-76,
Organism=Drosophila melanogaster, GI24640877, Length=366, Percent_Identity=40.7103825136612, Blast_Score=281, Evalue=5e-76,
Organism=Drosophila melanogaster, GI24640875, Length=366, Percent_Identity=40.7103825136612, Blast_Score=281, Evalue=5e-76,
Organism=Drosophila melanogaster, GI24640879, Length=325, Percent_Identity=38.1538461538462, Blast_Score=226, Evalue=2e-59,
Organism=Drosophila melanogaster, GI24585318, Length=188, Percent_Identity=28.7234042553192, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 40101; Mature: 39970

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKCGIVGLPNVGKSTLFNALTEAGIDAENYPFCTIDPNVGIVSVPDQRLNELAKIVKP
CCEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
ERIITTTMEFVDIAGLVTGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNIIHVSGKVD
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PIDDINTINMELILADIESCDRTVQRFAKMKKSGDKEALAKADFYTRLKEHLESEKPART
CCCCCCEEEHEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCE
FEMNEDETKWLKQTPLLTSKPVLYIANVNENGFENNPLLDKVVEYAKAENSNVVPVCAAM
ECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEHHHHHH
EQEISQLEADEKLEFLADMGLSETGLDRVIKAGYALLNLHTYLTAGVKEVRAWTIPVGAT
HHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
APQAAGVIHTDFERGFIRAEVIAYDDYIKYNGEKGAKEAGKARLEGKEYIMKDGDVVNFR
CCCCCCCEEECCCCCEEEEEEEEEECEEEECCCCCHHHHHHHHCCCHHHEECCCCEEEEE
FNV
ECC
>Mature Secondary Structure 
GFKCGIVGLPNVGKSTLFNALTEAGIDAENYPFCTIDPNVGIVSVPDQRLNELAKIVKP
CEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
ERIITTTMEFVDIAGLVTGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNIIHVSGKVD
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PIDDINTINMELILADIESCDRTVQRFAKMKKSGDKEALAKADFYTRLKEHLESEKPART
CCCCCCEEEHEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCE
FEMNEDETKWLKQTPLLTSKPVLYIANVNENGFENNPLLDKVVEYAKAENSNVVPVCAAM
ECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEHHHHHH
EQEISQLEADEKLEFLADMGLSETGLDRVIKAGYALLNLHTYLTAGVKEVRAWTIPVGAT
HHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
APQAAGVIHTDFERGFIRAEVIAYDDYIKYNGEKGAKEAGKARLEGKEYIMKDGDVVNFR
CCCCCCCEEECCCCCEEEEEEEEEECEEEECCCCCHHHHHHHHCCCHHHEECCCCEEEEE
FNV
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA